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Results for CNB 260572-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


260572_ENSG00000154945_HUMAN_9688_9755/1-71    CCGGGGGACCCTGTTCAGTGTGACAACGCTGACCCAGATATTTTCCGTTCCGACCCGGGG
260572_ENSRNOG00000002935_RAT_4048_4115/1-71   CCGGGGGACCCTATTCAGTGTGACAACATTGACCCAGATACTTTTCGTTCCCANNNNNNN
260572_ENSMUSG00000020864_MOUSE_6038_6105/1-71 CCGGGGGACCCTATTCGGTGTGACAACATTGACCTAGATACTTTTCGTTCCCANNNNNNN
260572_SINFRUG00000129036_FUGU_2040_2107/1-71  -CAGGGGACATCTTTTGGTGTGACACCACTGAGCGAAACATTCGT-TCCCCCCCCCCGAT
                                                * ******    **  ******** *  *** * * * * *       **         


260572_ENSG00000154945_HUMAN_9688_9755/1-71    CTCCGGC---G
260572_ENSRNOG00000002935_RAT_4048_4115/1-71   NNNNNNN---N
260572_ENSMUSG00000020864_MOUSE_6038_6105/1-71 NNNNNNN---N
260572_SINFRUG00000129036_FUGU_2040_2107/1-71  ATCCGACTGC-
                                                          

260572-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 71
 Mean pairwise identity:  62.35
 Mean single sequence MFE: -19.08
 Consensus MFE: -10.96
 Energy contribution: -11.40
 Covariance contribution:   0.44
 Mean z-score:  -1.75
 Structure conservation index:   0.57
 SVM decision value:   1.97
 SVM RNA-class probability: 0.984341
 Prediction: RNA

######################################################################

>260572_ENSG00000154945_HUMAN_9688_9755/1-71
CCGGGGGACCCUGUUCAGUGUGACAACGCUGACCCAGAUAUUUUCCGUUCCGACCCGGGGCUCCGGCG
((((((((..(((.(((((((....)))))))..))).....))))((((((...)))))).)))).. ( -25.30)
>260572_ENSRNOG00000002935_RAT_4048_4115/1-71
CCGGGGGACCCUAUUCAGUGUGACAACAUUGACCCAGAUACUUUUCGUUCCCANNNNNNNNNNNNNNN
...((((((.....(((((((....)))))))....((......))))))))................ ( -16.60)
>260572_ENSMUSG00000020864_MOUSE_6038_6105/1-71
CCGGGGGACCCUAUUCGGUGUGACAACAUUGACCUAGAUACUUUUCGUUCCCANNNNNNNNNNNNNNN
...((((((.....(((((((....)))))))....((......))))))))................ ( -15.80)
>260572_SINFRUG00000129036_FUGU_2040_2107/1-71
CAGGGGACAUCUUUUGGUGUGACACCACUGAGCGAAACAUUCGUUCCCCCCCCCCGAUAUCCGACUGC
..(((((((((....))))).........((((((.....)))))).....))))............. ( -18.60)
>consensus
CCGGGGGACCCUAUUCAGUGUGACAACACUGACCCAGAUACUUUUCGUUCCCA__________________
...((((((.....(((((((....)))))))....((......))))))))................... (-10.96 = -11.40 +   0.44) 

260572-rev.rnaz

RNAalifold consensus structure

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