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Results for CNB 386639-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


386639_ENSG00000158066_HUMAN_940_989/1-50        TGGTGTCGGATGAACCCGGATTCGGGACGACCGAAGGAAGTTGCACCTTG
386639_ENSDARG00000006691_ZEBRAFISH_909_956/1-50 -GGTGTCGGATGAACCCGGATTCGGGACGACCGAAAACTGTTGCACCTT-
386639_ENSMUSG00000051666_MOUSE_9549_9598/1-50   TGGTGTCGGATGAACCCGGATTCGGGACGACCGAAGAAAGTTGCACCGTT
386639_SINFRUG00000134705_FUGU_6366_6413/1-50    -GGTGTCGGATGAACCCGCAGTCGGGACGACCGATTACTGTTGCACCTT-
                                                  ***************** * *************     ******** * 

386639-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 50
 Mean pairwise identity:  87.58
 Mean single sequence MFE: -16.25
 Consensus MFE: -16.33
 Energy contribution: -15.95
 Covariance contribution:  -0.38
 Mean z-score:  -1.17
 Structure conservation index:   1.00
 SVM decision value:   0.30
 SVM RNA-class probability: 0.676188
 Prediction: RNA

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>386639_ENSG00000158066_HUMAN_940_989/1-50
UGGUGUCGGAUGAACCCGGAUUCGGGACGACCGAAGGAAGUUGCACCUUG
.((((((((......)))..(((((.....))))).......)))))... ( -16.10)
>386639_ENSDARG00000006691_ZEBRAFISH_909_956/1-50
GGUGUCGGAUGAACCCGGAUUCGGGACGACCGAAAACUGUUGCACCUU
((((((((......)))..(((((.....))))).......))))).. ( -16.10)
>386639_ENSMUSG00000051666_MOUSE_9549_9598/1-50
UGGUGUCGGAUGAACCCGGAUUCGGGACGACCGAAGAAAGUUGCACCGUU
.((((((((......)))..(((((.....))))).......)))))... ( -16.60)
>386639_SINFRUG00000134705_FUGU_6366_6413/1-50
GGUGUCGGAUGAACCCGCAGUCGGGACGACCGAUUACUGUUGCACCUU
((((((((......))).((((((.....))))))......))))).. ( -16.20)
>consensus
_GGUGUCGGAUGAACCCGGAUUCGGGACGACCGAAGAAAGUUGCACCUU_
.((((((((......)))..(((((.....))))).......)))))... (-16.33 = -15.95 +  -0.38) 

386639-rev.rnaz

RNAalifold consensus structure

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