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Results for CNB 154806-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


154806_ENSG00000180828_HUMAN_9464_9545/1-84        AGAAGACTCGCCTGTTGGGACAGCGC-T-TTCTACCCAATCAGGTTAACGTTTTAATTAA
154806_SINFRUG00000146103_FUGU_9519_9600/1-84      AAGAGAGGCACCTCTCCCCCCTTCACAC-CTTCGCCCAATCAGGTTAACGTTGTAATTAA
154806_ENSMUSG00000049424_MOUSE_9503_9582/1-84     -GAAGACTCGCCTGTTGGGACAGCGC-T-TTCTACCCAATCAGGTTAACGTTTTAATTAA
154806_ENSDARG00000025861_ZEBRAFISH_9583_9665/1-84 -GAAGATTCGCCTATCGGGAGTGAGCGCGCGCCACCCAATCAGGTTAACGTTTTAATTAA
                                                      ***  * *** *          *        ****************** *******


154806_ENSG00000180828_HUMAN_9464_9545/1-84        TAGGATTAAAACGGTAACAAACAA
154806_SINFRUG00000146103_FUGU_9519_9600/1-84      CGACATTTTCACGATGACAAACA-
154806_ENSMUSG00000049424_MOUSE_9503_9582/1-84     TAGGATTAAAACGGTAACAAACA-
154806_ENSDARG00000025861_ZEBRAFISH_9583_9665/1-84 TGGGATTAAAACGGTAACAAACAA
                                                       ***   *** * ******* 

154806-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 84
 Mean pairwise identity:  75.50
 Mean single sequence MFE: -18.99
 Consensus MFE: -11.96
 Energy contribution: -11.27
 Covariance contribution:  -0.69
 Mean z-score:  -1.96
 Structure conservation index:   0.63
 SVM decision value:   1.13
 SVM RNA-class probability: 0.919740
 Prediction: RNA

######################################################################

>154806_ENSG00000180828_HUMAN_9464_9545/1-84
AGAAGACUCGCCUGUUGGGACAGCGCUUUCUACCCAAUCAGGUUAACGUUUUAAUUAAUAGGAUUAAAACGGUAACAAACAA
.........((((((((((.............))))).)))))...((((((((((.....))))))))))........... ( -20.92)
>154806_SINFRUG00000146103_FUGU_9519_9600/1-84
AAGAGAGGCACCUCUCCCCCCUUCACACCUUCGCCCAAUCAGGUUAACGUUGUAAUUAACGACAUUUUCACGAUGACAAACA
..(((((....)))))......((((......(((......)))....(((((.....)))))........).)))...... ( -13.10)
>154806_ENSMUSG00000049424_MOUSE_9503_9582/1-84
GAAGACUCGCCUGUUGGGACAGCGCUUUCUACCCAAUCAGGUUAACGUUUUAAUUAAUAGGAUUAAAACGGUAACAAACA
........((((((((((.............))))).)))))...((((((((((.....)))))))))).......... ( -20.92)
>154806_ENSDARG00000025861_ZEBRAFISH_9583_9665/1-84
GAAGAUUCGCCUAUCGGGAGUGAGCGCGCGCCACCCAAUCAGGUUAACGUUUUAAUUAAUGGGAUUAAAACGGUAACAAACAA
........((((....((.(((.((....)))))))....))))...((((((((((.....))))))))))........... ( -21.00)
>consensus
_GAAGACUCGCCUGUCGGGACAGCGC_C_CUCCACCCAAUCAGGUUAACGUUUUAAUUAAUAGGAUUAAAACGGUAACAAACA_
....(((......)))...........................((((.((((((((((.....)))))))))).))))...... (-11.96 = -11.27 +  -0.69) 

154806-rev.rnaz

RNAalifold consensus structure

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