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Results for CNB 502451

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

502451_ENSG00000166535_HUMAN_9684_9739/1-58        -CAGATGCCCAGTGGCTGTGGCGAGCAGAACATGGTCTTGTTTGCTCCCATCATCTA-
502451_ENSMUSG00000052587_MOUSE_1864_1921/1-58     CCAAATGCCCTATGGCTGTGGGGAGCAGAACATGGTCCTTTTTGCTCCCAACATCTAC
502451_ENSRNOG00000014814_RAT_8495_8552/1-58       CCAAATGCCCTATGGCTGTGGGGAGCAGAACATGGTCCTTTTTGCTCCAAACATCTAT
502451_ENSDARG00000008835_ZEBRAFISH_2351_2408/1-58 ACAGATGCCTTATGGCTGTGGAGAACAGAACATGATCATTCTCGCTCCCAATATTTAC
                                                    ** *****   ********* ** ********* ** *  * ***** *  ** ** 


//

502451.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 58
 Mean pairwise identity:  82.76
 Mean single sequence MFE: -17.53
 Consensus MFE: -10.01
 Energy contribution: -11.83
 Covariance contribution:   1.81
 Mean z-score:  -2.31
 Structure conservation index:   0.57
 SVM decision value:   0.37
 SVM RNA-class probability: 0.710592
 Prediction: RNA

######################################################################

>502451_ENSG00000166535_HUMAN_9684_9739/1-58
CAGAUGCCCAGUGGCUGUGGCGAGCAGAACAUGGUCUUGUUUGCUCCCAUCAUCUA
.(((((((....))).((((.(((((((.((......))))))))))))).)))). ( -19.30)
>502451_ENSMUSG00000052587_MOUSE_1864_1921/1-58
CCAAAUGCCCUAUGGCUGUGGGGAGCAGAACAUGGUCCUUUUUGCUCCCAACAUCUAC
......(((....)))(((.((((((((((.........)))))))))).)))..... ( -19.70)
>502451_ENSRNOG00000014814_RAT_8495_8552/1-58
CCAAAUGCCCUAUGGCUGUGGGGAGCAGAACAUGGUCCUUUUUGCUCCAAACAUCUAU
(((...(((....)))..)))(((((((((.........))))))))).......... ( -19.00)
>502451_ENSDARG00000008835_ZEBRAFISH_2351_2408/1-58
ACAGAUGCCUUAUGGCUGUGGAGAACAGAACAUGAUCAUUCUCGCUCCCAAUAUUUAC
......(((....)))((.((((...((((........))))..))))))........ ( -12.10)
>consensus
CCAAAUGCCCUAUGGCUGUGGGGAGCAGAACAUGGUCCUUUUUGCUCCCAACAUCUAC
......(((....)))(((.((((((((((.........)))))))))).)))..... (-10.01 = -11.83 +   1.81) 

502451.rnaz

RNAalifold consensus structure

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