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Results for CNB 23410

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

23410_ENSMUSG00000027022_MOUSE_1204_1246/1-55     -----------GATGTTAGAACCTGCATGTGGCTGTTTGAAACTCAGCCACTTG-
23410_SINFRUG00000130283_FUGU_5276_5326/1-55      ---TGAGCCACGACGTAAGAGAAGCTCGGTGGATGTTTGAAACCAAACCGCTTG-
23410_ENSG00000168334_HUMAN_7381_7433/1-55        -TTTGAGACCCTTCCCTTGGACA-GCATTGGACAGGGTGAGGTTCTGGCCCATGG
23410_ENSDARG00000020243_ZEBRAFISH_7552_7594/1-55 -----------GATGTCCGTAGAAATTGTTGGGTGTTTGAGACACAACCGATGG-
23410_ENSRNOG00000018308_RAT_6563_6616/1-55       CTTCGCACTTCACAGGAAGCAGAAGGCAGCGTCTTCTAGGAACCCAAAGTATGG-
                                                                    * . .       *  :   :*...  .:.   .: * 


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23410.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 55
 Mean pairwise identity:  38.93
 Mean single sequence MFE: -11.56
 Consensus MFE:  -1.48
 Energy contribution:  -1.60
 Covariance contribution:   0.12
 Mean z-score:  -0.33
 Structure conservation index:   0.13
 SVM decision value:   0.00
 SVM RNA-class probability: 0.533916
 Prediction: RNA

######################################################################

>23410_ENSMUSG00000027022_MOUSE_1204_1246/1-55
GAUGUUAGAACCUGCAUGUGGCUGUUUGAAACUCAGCCACUUG
.((((........))))(((((((.........)))))))... ( -13.00)
>23410_SINFRUG00000130283_FUGU_5276_5326/1-55
UGAGCCACGACGUAAGAGAAGCUCGGUGGAUGUUUGAAACCAAACCGCUUG
.((((..(..(....).)..))))(((((...((((....))))))))).. ( -11.00)
>23410_ENSG00000168334_HUMAN_7381_7433/1-55
UUUGAGACCCUUCCCUUGGACAGCAUUGGACAGGGUGAGGUUCUGGCCCAUGG
....(((.(((..(((((..(......)..)))))..))).)))......... ( -17.40)
>23410_ENSDARG00000020243_ZEBRAFISH_7552_7594/1-55
GAUGUCCGUAGAAAUUGUUGGGUGUUUGAGACACAACCGAUGG
..............(..(((((((((...)))))..))))..) (  -7.10)
>23410_ENSRNOG00000018308_RAT_6563_6616/1-55
CUUCGCACUUCACAGGAAGCAGAAGGCAGCGUCUUCUAGGAACCCAAAGUAUGG
.(((...((((....)))).(((((((...))))))).)))..(((.....))) (  -9.30)
>consensus
____G_____CGACGUAAGAACAAGCAGGUGGCUGUUUGAAACCCAACCGCUUG_
.........................(((((((.((.........)).))))))). ( -1.48 =  -1.60 +   0.12) 

23410.rnaz

RNAalifold consensus structure

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