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Results for CNB 160930

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

160930_ENSG00000182968_HUMAN_9151_9250/1-109        C-------GTCACTCGCCAGCGCGCCAT--GCAAATCACCGCCGCCGCCGGCTCCCATTG
160930_ENSDARG00000008131_ZEBRAFISH_8806_8907/1-109 C-------GTCACCTGACCGTGAGCCATATGCAAATCAGCCCCGTCCTCAAACGCCATTG
160930_ENSMUSG00000047701_MOUSE_9157_9256/1-109     C-------GTCACTCGCCAGCGCGCCAT--GCAAATCACCGCCGCCGCCGGTTCCCATTG
160930_SINFRUG00000126913_FUGU_9627_9731/1-109      -TCTTTTAGTCACCTGACCAAACGCCAT--GCAAATCATTCTGTTGCTGGAGCCCCATTG
                                                            *****  * *     *****  ********                ******


160930_ENSG00000182968_HUMAN_9151_9250/1-109        GCCGCGGCGCGCTCATTTAATGGCAGCCCGGGCCCGGCGTATGGCTGCT
160930_ENSDARG00000008131_ZEBRAFISH_8806_8907/1-109 GCTCTCTCTCACTCATTTATTCCCTGTCAAAGCGCATCATATGGCCGCT
160930_ENSMUSG00000047701_MOUSE_9157_9256/1-109     GCCGCGGCGCGCTCATTTAATGGCAGCCCGGGCCCGGCGTATGGCTGCT
160930_SINFRUG00000126913_FUGU_9627_9731/1-109      GCCGCTCCAGACTCATTTAACCGCTGTCAGAGCGCATCATATGGCCGC-
                                                    **     *   ********    * * *   ** *  * ****** ** 


//

160930.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 109
 Mean pairwise identity:  67.30
 Mean single sequence MFE: -33.80
 Consensus MFE: -19.75
 Energy contribution: -20.57
 Covariance contribution:   0.81
 Mean z-score:  -1.26
 Structure conservation index:   0.58
 SVM decision value:   0.11
 SVM RNA-class probability: 0.587229
 Prediction: RNA

######################################################################

>160930_ENSG00000182968_HUMAN_9151_9250/1-109
CGUCACUCGCCAGCGCGCCAUGCAAAUCACCGCCGCCGCCGGCUCCCAUUGGCCGCGGCGCGCUCAUUUAAUGGCAGCCCGGGCCCGGCGUAUGGCUGCU
.((((..((((.....(((((..((((...(((.(((((.((((......))))))))))))...)))).))))).((....))..))))..)))).... ( -43.80)
>160930_ENSDARG00000008131_ZEBRAFISH_8806_8907/1-109
CGUCACCUGACCGUGAGCCAUAUGCAAAUCAGCCCCGUCCUCAAACGCCAUUGGCUCUCUCUCACUCAUUUAUUCCCUGUCAAAGCGCAUCAUAUGGCCGCU
.(((....))).(((.((((((((............((......))(((.(((((.......................))))).).))..))))))))))). ( -21.50)
>160930_ENSMUSG00000047701_MOUSE_9157_9256/1-109
CGUCACUCGCCAGCGCGCCAUGCAAAUCACCGCCGCCGCCGGUUCCCAUUGGCCGCGGCGCGCUCAUUUAAUGGCAGCCCGGGCCCGGCGUAUGGCUGCU
.((((..((((((((((((..((........)).((.((((((....)))))).))))))))))........(((.......))).))))..)))).... ( -43.50)
>160930_SINFRUG00000126913_FUGU_9627_9731/1-109
UCUUUUAGUCACCUGACCAAACGCCAUGCAAAUCAUUCUGUUGCUGGAGCCCCAUUGGCCGCUCCAGACUCAUUUAACCGCUGUCAGAGCGCAUCAUAUGGCCGC
.......(((....))).....((((((..........((...(((((((((....))..)))))))...))......((((.....)))).....))))))... ( -26.40)
>consensus
C_______GUCACCCGACAGCGCGCCAU__GCAAAUCACCCCCGCCCCCGAACCCCAUUGGCCGCGGCGCACUCAUUUAAUCGCAGCCAGAGCCCAGCAUAUGGCCGCU
........((((..((((.(((((((....((........((((....))))........))...))))))).........(((.......))).))))..)))).... (-19.75 = -20.57 +   0.81) 

160930.rnaz

RNAalifold consensus structure

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