Index >

Results for CNB 116399-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


116399_ENSG00000082126_HUMAN_1227_1333/1-107        TGCTTCCTCACTCTCAGGGATATTGTCTGGCAGTGGAGGGAGAAGGGGTTCAAAATCTTT
116399_ENSDARG00000008474_ZEBRAFISH_9893_9998/1-107 -GCCTCCTCATTGTCAGACAGATTGTCAGGAAGGGGCGGAAGCACTGGCCCATAATCTCT
116399_ENSMUSG00000026025_MOUSE_1993_2098/1-107     -GCTTCTTCACTGTCGGGGATATTGTCTGGCAGTGGGGGGAGAAGGGGTTCAAAGTCTTT
116399_ENSRNOG00000010486_RAT_9894_9998/1-107       -GCTTCTTCACTGTCGGGGATATTGTCTGGCAGTGGAGGGAGAAGGGGTTCAAAGTCTTT
                                                     ** ** *** * ** *  * ****** ** ** ** ** ** *  **  ** * *** *


116399_ENSG00000082126_HUMAN_1227_1333/1-107        CTGAGCTATCGTGTCATGGGCACTGAGCAAGGCCTGGGCACAGGGAA
116399_ENSDARG00000008474_ZEBRAFISH_9893_9998/1-107 CTGAGCCACAGAATCATGGGCAGAGAGCAAAGCCTGTGGAGAAAAAC
116399_ENSMUSG00000026025_MOUSE_1993_2098/1-107     CTGAGCCACTGTGTCATGGGCACTCAGCAAGGCCTAGGGACAGAAGA
116399_ENSRNOG00000010486_RAT_9894_9998/1-107       CTGAGCCACTGTGTCATGGGCCCTCAGCAAAGCCTAGGGACAGAAG-
                                                    ****** *  *  ********    ***** ****  * * *     

116399-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 107
 Mean pairwise identity:  78.72
 Mean single sequence MFE: -37.25
 Consensus MFE: -26.39
 Energy contribution: -27.33
 Covariance contribution:   0.94
 Mean z-score:  -1.58
 Structure conservation index:   0.71
 SVM decision value:   0.16
 SVM RNA-class probability: 0.613252
 Prediction: RNA

######################################################################

>116399_ENSG00000082126_HUMAN_1227_1333/1-107
UGCUUCCUCACUCUCAGGGAUAUUGUCUGGCAGUGGAGGGAGAAGGGGUUCAAAAUCUUUCUGAGCUAUCGUGUCAUGGGCACUGAGCAAGGCCUGGGCACAGGGAA
..((((((((((.(((((.......))))).))).)))))))....((((((.........))))))...(((((.(((((.((.....))))))))))))...... ( -35.40)
>116399_ENSDARG00000008474_ZEBRAFISH_9893_9998/1-107
GCCUCCUCAUUGUCAGACAGAUUGUCAGGAAGGGGCGGAAGCACUGGCCCAUAAUCUCUCUGAGCCACAGAAUCAUGGGCAGAGAGCAAAGCCUGUGGAGAAAAAC
..((((.((...(((((.(((((((..((..((.((....)).))..)).))))))).)))))(((.((......))))).............)).))))...... ( -35.10)
>116399_ENSMUSG00000026025_MOUSE_1993_2098/1-107
GCUUCUUCACUGUCGGGGAUAUUGUCUGGCAGUGGGGGGAGAAGGGGUUCAAAGUCUUUCUGAGCCACUGUGUCAUGGGCACUCAGCAAGGCCUAGGGACAGAAGA
(((((((((((((((((.......)))))))))))))..(((((((.(....).)))))))))))..((((.((.(((((.((.....))))))))).)))).... ( -39.70)
>116399_ENSRNOG00000010486_RAT_9894_9998/1-107
GCUUCUUCACUGUCGGGGAUAUUGUCUGGCAGUGGAGGGAGAAGGGGUUCAAAGUCUUUCUGAGCCACUGUGUCAUGGGCCCUCAGCAAAGCCUAGGGACAGAAG
(((((((((((((((((.......)))))))))))))..(((((((.(....).)))))))))))..((((.((.(((((..........))))))).))))... ( -38.80)
>consensus
_GCUUCCUCACUGUCAGGGAUAUUGUCUGGCAGUGGAGGGAGAAGGGGUUCAAAAUCUUUCUGAGCCACUGUGUCAUGGGCACUCAGCAAAGCCUAGGGACAGAAAA
..((((((((((((((((.......))))))))))).)))))....((((((.........))))))..(.((((..((((..........))))...)))).)... (-26.39 = -27.33 +   0.94) 

116399-rev.rnaz

RNAalifold consensus structure

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