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Results for CNB 233826-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


233826_ENSG00000154358_HUMAN_506_591/1-86        TTCCCGTCCTTGTACCACGTCACCTCTGTCTGGGCCTGGGCCACCTCGCAGCTCAGCGTG
233826_ENSMUSG00000020452_MOUSE_3372_3457/1-86   TTCCCGTCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCGCAGCTCAGTGTG
233826_ENSRNOG00000008975_RAT_3479_3564/1-86     TTCCCATCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCACAGCTCAGTGTG
233826_ENSDARG00000022108_ZEBRAFISH_735_818/1-86 -TCTTATTTTTCCTCCAGATGACTTTGGCTCCAGACTTGGCAAGTTCACACCGAAACACT
233826_SINFRUG00000147616_FUGU_1538_1623/1-86    TTGCCATCTTTGTACCATTTCACTTCTGTTTTCCTATCGGCTACTTCACAGCTCAGAGTG
                                                  *    *  **   ***  * ** *  *        * *** *  ** ** *  *     


233826_ENSG00000154358_HUMAN_506_591/1-86        GCAATGGCCCCCGCCTCGGCCTGCAC
233826_ENSMUSG00000020452_MOUSE_3372_3457/1-86   GCACTGGCCCCCGCCTCTGCCTTCAC
233826_ENSRNOG00000008975_RAT_3479_3564/1-86     GCACTGGCCCCGGCCTCTGCCTTCAC
233826_ENSDARG00000022108_ZEBRAFISH_735_818/1-86 GCATTTTCCCCAGTTTCAGTTTCCA-
233826_SINFRUG00000147616_FUGU_1538_1623/1-86    GCTCTCTGGGACAAGATGGCTTTCAC
                                                 **  *             *  * ** 

233826-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 86
 Mean pairwise identity:  65.70
 Mean single sequence MFE: -22.72
 Consensus MFE: -13.72
 Energy contribution: -13.24
 Covariance contribution:  -0.48
 Mean z-score:  -1.27
 Structure conservation index:   0.60
 SVM decision value:   0.08
 SVM RNA-class probability: 0.571552
 Prediction: RNA

######################################################################

>233826_ENSG00000154358_HUMAN_506_591/1-86
UUCCCGUCCUUGUACCACGUCACCUCUGUCUGGGCCUGGGCCACCUCGCAGCUCAGCGUGGCAAUGGCCCCCGCCUCGGCCUGCAC
...........................(((.((((..((((((((.(((......))).))...))))))..)))).)))...... ( -28.20)
>233826_ENSMUSG00000020452_MOUSE_3372_3457/1-86
UUCCCGUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCGCAGCUCAGUGUGGCACUGGCCCCCGCCUCUGCCUUCAC
...........................((..((((..((((((((.(((......))).))...))))))..))))..))...... ( -23.90)
>233826_ENSRNOG00000008975_RAT_3479_3564/1-86
UUCCCAUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCGGCCUCUGCCUUCAC
...........................((..(((((.((((((((.(((......))).))...)))))).)))))..))...... ( -28.70)
>233826_ENSDARG00000022108_ZEBRAFISH_735_818/1-86
UCUUAUUUUUCCUCCAGAUGACUUUGGCUCCAGACUUGGCAAGUUCACACCGAAACACUGCAUUUUCCCCAGUUUCAGUUUCCA
................(..((((..((((...((....(((..(((.....)))....)))....))...))))..))))..). (  -8.90)
>233826_SINFRUG00000147616_FUGU_1538_1623/1-86
UUGCCAUCUUUGUACCAUUUCACUUCUGUUUUCCUAUCGGCUACUUCACAGCUCAGAGUGGCUCUCUGGGACAAGAUGGCUUUCAC
..((((((((.((.((......................((((.......))))(((((.....)))))))))))))))))...... ( -23.90)
>consensus
UUCCCAUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGCGUGGCACUGGCCCCCGCCUCGGCCUUCAC
...............................(((((...(((((((........)).)))))...)))))................ (-13.72 = -13.24 +  -0.48) 

233826-rev.rnaz

RNAalifold consensus structure

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