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Results for CNB 238188-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


238188_ENSG00000170166_HUMAN_8682_8778/1-98        TGAAGTTTTTGCATCGACCATATATTCCCCTAGAATCGAATCTGTGACTATACGGATACC
238188_SINFRUG00000124775_FUGU_7738_7833/1-98      -GAAGATTTTTCATCGCCCATATACTCCCCTAGAATCGAATCTGTGACTTTGACGCCATC
238188_ENSMUSG00000042464_MOUSE_8782_8878/1-98     TGAAGTTTTTGCATCGACCATATATTCCCCTAGAATCGAATCTGTGACTATGTGGGTACC
238188_ENSRNOG00000001578_RAT_8767_8863/1-98       TGAAGTTTTTGCATCGACCATATATTCCCCTAGAATCGAATCTGTGACTATGTGGGTACC
238188_ENSDARG00000010540_ZEBRAFISH_5246_5342/1-98 -GAAGTTATTGCATCGACCATATACTCCCCTAGAATCGAATCTGTGAATGTTATTTTTTC
                                                    **** * ** ***** ******* ********************** * *        *


238188_ENSG00000170166_HUMAN_8682_8778/1-98        ACACAAATTCGGTTCTACAGGGTATATATAGACAACG-
238188_SINFRUG00000124775_FUGU_7738_7833/1-98      ACACAAATTCGGTTCTACAGGGTATATATAGACGACG-
238188_ENSMUSG00000042464_MOUSE_8782_8878/1-98     ACACAAATTCGGTTCTACAGGGTATATATAGACAACG-
238188_ENSRNOG00000001578_RAT_8767_8863/1-98       ACACAAATTCGGTTCTACAGGGTATATATAGACAACG-
238188_ENSDARG00000010540_ZEBRAFISH_5246_5342/1-98 ACACAAATTCGGTTCTACAGGGTATATATAGACGACGG
                                                   ********************************* *** 

238188-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 98
 Mean pairwise identity:  89.93
 Mean single sequence MFE: -26.38
 Consensus MFE: -24.38
 Energy contribution: -24.46
 Covariance contribution:   0.08
 Mean z-score:  -2.83
 Structure conservation index:   0.92
 SVM decision value:   4.49
 SVM RNA-class probability: 0.999907
 Prediction: RNA

######################################################################

>238188_ENSG00000170166_HUMAN_8682_8778/1-98
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUACGGAUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACG
.((.((....)).))....((((((.(((.(((((((((((.((((..(((....)))...)))).)))))))))))..))).))))))........ ( -25.10)
>238188_SINFRUG00000124775_FUGU_7738_7833/1-98
GAAGAUUUUUCAUCGCCCAUAUACUCCCCUAGAAUCGAAUCUGUGACUUUGACGCCAUCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACGACG
............(((.(.(((((..(((.(((((((((((.((((....((....))...)))).)))))))))))..)))..))))).).))).. ( -27.50)
>238188_ENSMUSG00000042464_MOUSE_8782_8878/1-98
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUGUGGGUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACG
.((.((....)).))....((((((.(((.(((((((((((.(((((((.....)))....)))).)))))))))))..))).))))))........ ( -25.90)
>238188_ENSRNOG00000001578_RAT_8767_8863/1-98
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUGUGGGUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACG
.((.((....)).))....((((((.(((.(((((((((((.(((((((.....)))....)))).)))))))))))..))).))))))........ ( -25.90)
>238188_ENSDARG00000010540_ZEBRAFISH_5246_5342/1-98
GAAGUUAUUGCAUCGACCAUAUACUCCCCUAGAAUCGAAUCUGUGAAUGUUAUUUUUUCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACGACGG
..........(.(((.(.(((((..(((.(((((((((((.((((((.........))))))...)))))))))))..)))..))))).).))).). ( -27.50)
>consensus
UGAAGUUUUUGCAUCGACCAUAUAUUCCCCUAGAAUCGAAUCUGUGACUAUGAGGGUACCACACAAAUUCGGUUCUACAGGGUAUAUAUAGACAACG_
.((.((....)).))....((((((.(((.(((((((((((.((((...............)))).)))))))))))..))).))))))......... (-24.38 = -24.46 +   0.08) 

238188-rev.rnaz

RNAalifold consensus structure

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