Index >

Results for CNB 145953

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

145953_ENSG00000169797_HUMAN_9708_9826/1-125        -CCACCTGCTCCTTGGGGAGC-GCCCATTGTGCCCGCGCCAATTCACAGGCAATTTAGCG
145953_ENSRNOG00000013850_RAT_9660_9778/1-125       -CCACCTGCTCCTCGGGGAGC-GACCATTGTGCCCGCGCCAATTCACAGGCAATTTAGCG
145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125 TCCACCTGCTCCCCAAAGACCAGCCCATTGTTCCCTGAGCAATAAGCACGTCATTTAGCA
145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125     -CCACCTGCTCCTCGGGGAGC-GACCATTGTGCCCGCGCCAATTCACAGGCAATTTAGCG
145953_SINFRUG00000138848_FUGU_3852_3976/1-125      TCCACCTGCTCCCCGGAGACACACTCATTGTCCCCACGGCTATAAACACTTCATTGAGCA
                                                     ***********     **      ****** ***    * **   **    *** *** 


145953_ENSG00000169797_HUMAN_9708_9826/1-125        TGCGCTAATGGGCCGGCGCCTTT-GTGCGGCCC-GCCCGGCCATTGGCC-GCGGAGTGTG
145953_ENSRNOG00000013850_RAT_9660_9778/1-125       TGCGCTAATGGGCCGGCGCCTTT-GTGCGGCCG-GCGCCGCCATTGGCC-GCTGAGTGTG
145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125 TGTGGCGGCCCTCTGCTACTTCT-GTCTTTAGA-GCTCTCCCATTGGCT-GCAGACTGTG
145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125     TGCGCTAATGGGCCGGCGCCTTT-GTGCGGCCG-GCGCCGCCATTGGCC-GCCGAGTGTG
145953_SINFRUG00000138848_FUGU_3852_3976/1-125      TGTGGCAGCCCTGCGTTCCTCAAAGCCCTTCCCAGCGTTCCCATTGGCCTGGGGACTGTG
                                                    ** *          *   *     *         **    ********  *  ** ****


145953_ENSG00000169797_HUMAN_9708_9826/1-125        GGAA-
145953_ENSRNOG00000013850_RAT_9660_9778/1-125       GGAA-
145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125 AGAAC
145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125     GGAA-
145953_SINFRUG00000138848_FUGU_3852_3976/1-125      AGAAA
                                                     *** 


//

145953.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 125
 Mean pairwise identity:  70.81
 Mean single sequence MFE: -49.90
 Consensus MFE: -19.34
 Energy contribution: -19.14
 Covariance contribution:  -0.20
 Mean z-score:  -1.95
 Structure conservation index:   0.39
 SVM decision value:   0.92
 SVM RNA-class probability: 0.881375
 Prediction: RNA

######################################################################

>145953_ENSG00000169797_HUMAN_9708_9826/1-125
CCACCUGCUCCUUGGGGAGCGCCCAUUGUGCCCGCGCCAAUUCACAGGCAAUUUAGCGUGCGCUAAUGGGCCGGCGCCUUUGUGCGGCCCGCCCGGCCAUUGGCCGCGGAGUGUGGGAA
......(((((....))))).(((((...((((((((((((...(.(((...(((((....))))).((((((.(((....)))))))))))).)...))))).))))).))))))).. ( -59.40)
>145953_ENSRNOG00000013850_RAT_9660_9778/1-125
CCACCUGCUCCUCGGGGAGCGACCAUUGUGCCCGCGCCAAUUCACAGGCAAUUUAGCGUGCGCUAAUGGGCCGGCGCCUUUGUGCGGCCGGCGCCGCCAUUGGCCGCUGAGUGUGGGAA
(((((((((((....)))))..(((((((((.((((((........)))......))).)))).)))))..(((((((..((.(((((....)))))))..)).))))))).))))... ( -56.40)
>145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125
UCCACCUGCUCCCCAAAGACCAGCCCAUUGUUCCCUGAGCAAUAAGCACGUCAUUUAGCAUGUGGCGGCCCUCUGCUACUUCUGUCUUUAGAGCUCUCCCAUUGGCUGCAGACUGUGAGAAC
(((((((((...((((.(((..((..(((((((...)))))))..))..)))....(((..(((((((....))))))).((((....)))))))......))))..))))...))).)).. ( -33.80)
>145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125
CCACCUGCUCCUCGGGGAGCGACCAUUGUGCCCGCGCCAAUUCACAGGCAAUUUAGCGUGCGCUAAUGGGCCGGCGCCUUUGUGCGGCCGGCGCCGCCAUUGGCCGCCGAGUGUGGGAA
(((((((((((....)))))..(((((((((.((((((........)))......))).)))).)))))..(((((((..((.(((((....)))))))..)).))))))).))))... ( -58.60)
>145953_SINFRUG00000138848_FUGU_3852_3976/1-125
UCCACCUGCUCCCCGGAGACACACUCAUUGUCCCCACGGCUAUAAACACUUCAUUGAGCAUGUGGCAGCCCUGCGUUCCUCAAAGCCCUUCCCAGCGUUCCCAUUGGCCUGGGGACUGUGAGAAA
......(((((....))).))..(((((.(((((((.(((((..(((......(((((.(((..(.....)..)))..))))).((........))))).....)))))))))))).)))))... ( -41.30)
>consensus
_CCACCUGCUCCUCGGGGAGC_GCCCAUUGUGCCCGCGCCAAUUCACAGGCAAUUUAGCGUGCGCUAAUGGGCCGGCGCCUUU_GUGCGGCCC_GCGCCGCCAUUGGCC_GCGGAGUGUGGGAA_
.......(((((....)))))...........(((((((......................(((((........)))))........((((...((..........))..)))).)))))))... (-19.34 = -19.14 +  -0.20) 

145953.rnaz

RNAalifold consensus structure

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