Index >

Results for CNB 300313

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

300313_ENSG00000108001_HUMAN_9433_9523/1-93        -CGTCACCCTCTGACAGCGCCGCTCCCGGGGGCTTCGAGTTTT-GGCTCCCGGGAAAGGG
300313_ENSRNOG00000016102_RAT_9424_9514/1-93       -CGTCACCCTCTGACAGCGCCGCTCCCGGGGGCTTCGAGTTTT-GGCTCCCGGGAAAGGG
300313_ENSMUSG00000010476_MOUSE_9424_9514/1-93     -CGTCACCCTCTGACAGCGCCGCTCCCGGGGGCTTCGAGTTTT-GGCTCCCGGGAAAGGG
300313_SINFRUG00000145103_FUGU_9333_9423/1-93      GCGTCATATTCTGACAGCGCCTCTCCCGTGGGTTTAGAGTTTT-GGCTCCCGGGAAAGAT
300313_ENSDARG00000003613_ZEBRAFISH_9346_9438/1-93 GCGTCATCCTCTGACAGCGTGGATCCCGTGGGTCTGGAGTTTTTGGCTCCCGGGAAAGGT
                                                    *****   **********    ***** ***  * ******* **************  


300313_ENSG00000108001_HUMAN_9433_9523/1-93        TCCATTCCTCGGGGAGAGAGGGCTGAGTTTTGT
300313_ENSRNOG00000016102_RAT_9424_9514/1-93       TCCATTCCTCGGGGAGAGAGGGCTGAGTTTTGT
300313_ENSMUSG00000010476_MOUSE_9424_9514/1-93     TCCATTCCTCGGGGAGAGAGGGCTGAGTTTTGT
300313_SINFRUG00000145103_FUGU_9333_9423/1-93      TTCAGTCCTCGGGGAAAGAGGGCTTAGTTTTG-
300313_ENSDARG00000003613_ZEBRAFISH_9346_9438/1-93 TCCAGTCCTGGGGGATAGAGGGTTGAGTTTTGT
                                                   * ** **** ***** ****** * ******* 


//

300313.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 93
 Mean pairwise identity:  88.49
 Mean single sequence MFE: -37.70
 Consensus MFE: -30.78
 Energy contribution: -31.02
 Covariance contribution:   0.24
 Mean z-score:  -1.47
 Structure conservation index:   0.82
 SVM decision value:   0.19
 SVM RNA-class probability: 0.628126
 Prediction: RNA

######################################################################

>300313_ENSG00000108001_HUMAN_9433_9523/1-93
CGUCACCCUCUGACAGCGCCGCUCCCGGGGGCUUCGAGUUUUGGCUCCCGGGAAAGGGUCCAUUCCUCGGGGAGAGAGGGCUGAGUUUUGU
..(((((((((....((.((..(((((((((((.........)))))))))))..))))...((((....)))))))))).)))....... ( -41.50)
>300313_ENSRNOG00000016102_RAT_9424_9514/1-93
CGUCACCCUCUGACAGCGCCGCUCCCGGGGGCUUCGAGUUUUGGCUCCCGGGAAAGGGUCCAUUCCUCGGGGAGAGAGGGCUGAGUUUUGU
..(((((((((....((.((..(((((((((((.........)))))))))))..))))...((((....)))))))))).)))....... ( -41.50)
>300313_ENSMUSG00000010476_MOUSE_9424_9514/1-93
CGUCACCCUCUGACAGCGCCGCUCCCGGGGGCUUCGAGUUUUGGCUCCCGGGAAAGGGUCCAUUCCUCGGGGAGAGAGGGCUGAGUUUUGU
..(((((((((....((.((..(((((((((((.........)))))))))))..))))...((((....)))))))))).)))....... ( -41.50)
>300313_SINFRUG00000145103_FUGU_9333_9423/1-93
GCGUCAUAUUCUGACAGCGCCUCUCCCGUGGGUUUAGAGUUUUGGCUCCCGGGAAAGAUUUCAGUCCUCGGGGAAAGAGGGCUUAGUUUUG
((((((.....)))).)).....(((((.(((((.........))))).)))))((((((..(((((((.......))))))).)))))). ( -29.70)
>300313_ENSDARG00000003613_ZEBRAFISH_9346_9438/1-93
GCGUCAUCCUCUGACAGCGUGGAUCCCGUGGGUCUGGAGUUUUUGGCUCCCGGGAAAGGUUCCAGUCCUGGGGGAUAGAGGGUUGAGUUUUGU
...((((((((((..(((.(((((((...)))))))..))).....(((((((((..(....)..))))))))).))))))).)))....... ( -34.30)
>consensus
_CGUCACCCUCUGACAGCGCCGCUCCCGGGGGCUUCGAGUUUU_GGCUCCCGGGAAAGGGUCCAUUCCUCGGGGAGAGAGGGCUGAGUUUUGU
...(((((((((.......((..(((((((((((..........)))))))))))..)).....((((....)))))))))).)))....... (-30.78 = -31.02 +   0.24) 

300313.rnaz

RNAalifold consensus structure

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