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Results for CNB 430443-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


430443_ENSG00000114315_HUMAN_9330_9368/1-68        TATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAA---------------------
430443_ENSDARG00000006514_ZEBRAFISH_8648_8712/1-68 -ATTTTGACATCTGTCGGCTCACGAGC-ACTATTGTGAATGTGAAGCACGTGCCAGGATG
430443_ENSMUSG00000022528_MOUSE_9691_9729/1-68     TATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAA---------------------
430443_SINFRUG00000139781_FUGU_9644_9682/1-68      TATTTATATCTCGCCCTGCACGCGAACGGCTCGTGTGAA---------------------
430443_ENSRNOG00000001720_RAT_8486_8551/1-68       -AGTTTGACATCAGCCGGCCGGCGAG-GGCGCGCCTGGAGTCGGAGCACGTGCCAGGATG
                                                    * :*: * .*    * **  .***.  .* .   **.*                     


430443_ENSG00000114315_HUMAN_9330_9368/1-68        --------
430443_ENSDARG00000006514_ZEBRAFISH_8648_8712/1-68 TTTTATT-
430443_ENSMUSG00000022528_MOUSE_9691_9729/1-68     --------
430443_SINFRUG00000139781_FUGU_9644_9682/1-68      --------
430443_ENSRNOG00000001720_RAT_8486_8551/1-68       TTTTATTG
                                                           

430443-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 68
 Mean pairwise identity:  48.39
 Mean single sequence MFE: -14.32
 Consensus MFE:  -5.96
 Energy contribution:  -6.32
 Covariance contribution:   0.36
 Mean z-score:  -0.85
 Structure conservation index:   0.42
 SVM decision value:   1.93
 SVM RNA-class probability: 0.982874
 Prediction: RNA

######################################################################

>430443_ENSG00000114315_HUMAN_9330_9368/1-68
UAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAA
..................(((((((.....))))))).. (  -9.20)
>430443_ENSDARG00000006514_ZEBRAFISH_8648_8712/1-68
AUUUUGACAUCUGUCGGCUCACGAGCACUAUUGUGAAUGUGAAGCACGUGCCAGGAUGUUUUAUU
.....(((((((..(((((((((..(((....)))..)))).))).)).....)))))))..... ( -20.10)
>430443_ENSMUSG00000022528_MOUSE_9691_9729/1-68
UAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAA
..................(((((((.....))))))).. (  -9.20)
>430443_SINFRUG00000139781_FUGU_9644_9682/1-68
UAUUUAUAUCUCGCCCUGCACGCGAACGGCUCGUGUGAA
..................(((((((.....))))))).. (  -9.20)
>430443_ENSRNOG00000001720_RAT_8486_8551/1-68
AGUUUGACAUCAGCCGGCCGGCGAGGGCGCGCCUGGAGUCGGAGCACGUGCCAGGAUGUUUUAUUG
(((..((((((.((((.(((((..(((....)))...)))))....)).))...))))))..))). ( -23.90)
>consensus
UAUUUAUAUCUCGGACUGCACGCGAACGGCUCGUGUGAA_____________________________
..................(((((((.....)))))))............................... ( -5.96 =  -6.32 +   0.36) 

430443-rev.rnaz

RNAalifold consensus structure

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