Index >

Results for CNB 481656_0

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            ACTGGCCATTGGCTTGTCCTGGTCTCTTTTTCATGTCCAGCCCCTGATGTGTGTCCATTG
481656_ENSG00000119866_HUMAN_9496_9947/1-454             ACTGGCCATTGGCTTGTCCTGGTCTCTTTTTCATGTCCAGCCCCTGATGTGTGTCCATTG
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          -CTGGCCATTGGCTTGTCCTGGTCTCTTTTTCATGTCCAGCCCCTGATGTGTGTCCATTG
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      -CTGTCCATTGGCTTCTTCGGGTCTATTTTTCATGTCCAGCCCCTAATGAGTGTCCATTG


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            GTGT-GAGCTTCCCCTTCCCTCCTCCCCTTCTCTCCTGCTC-GCCCTGCCCATGTTTTGT
481656_ENSG00000119866_HUMAN_9496_9947/1-454             GTGT-GAGCTTCCCCTTCCCTCCTCCCCTTCTCTCCTGCTC-GCCCTGCCCATGTTTTGT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          GTGT-GAGCTTCCCCTTCCCTCCTCCCCTTCTCTCCTGCTC-GCCCTGCCCATGTTTTGT
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      GTTTTGTTATTTCCACTCCCTCCTCC--TACTCCACGGCTTTGCCCTGCCCATGTTCTGT


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            GTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCAGGGACGTCACGTCCGCACTT
481656_ENSG00000119866_HUMAN_9496_9947/1-454             GTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCAGGGACGTCACGTCCGCACTT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          GTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCAGGGACGTCACGTCCGCACTT
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      ATGTCTGTGTCCATCCAT-CTCCTGACGTTCAAGTTCGCAGGGACGTCACGTCCGCACTT


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            GAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCANNNNNNNNNNNNNNNNNNNNNN
481656_ENSG00000119866_HUMAN_9496_9947/1-454             GAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCANNNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          GAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCANNNNNNNNNNNNNNNNNNNNNN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      GAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTT-CATCTC------------------


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTCTTNNNNNNNNNNNNNN----
481656_ENSG00000119866_HUMAN_9496_9947/1-454             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTAA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          NNNNNNNNNNNNNNNNNNNNNNTT------TTTTTCCTTNNNNNNNNNNNN---------
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      ------------------------------TCTCTCTCTCTTTTCAAAAAA---------

481656_0.aln

RNAz output


############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 300
 Mean pairwise identity:  79.27
 Mean single sequence MFE: -60.37
 Consensus MFE: -50.72
 Energy contribution: -52.09
 Covariance contribution:   1.38
 Mean z-score:  -2.82
 Structure conservation index:   0.84
 SVM decision value:   3.19
 SVM RNA-class probability: 0.998706
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
ACUGGCCAUUGGCUUGUCCUGGUCUCUUUUUCAUGUCCAGCCCCUGAUGUGUGUCCAUUGGUGUGAGCUUCCCCUUCCCUCCUCCCCUUCUCUCCUGCUCGCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUUUUUUUUCUUNNNNNNNNNNNNNN
..((((.(..((((....((((.(..........).))))(((((((.(((((..((..((.((((((............................))))))))))..)))......((((((...(((......)))....)))((((((((..((..(((((...)))))))))))))))..))))))))))))))))..)))))....................................................................................... ( -62.59)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
ACUGGCCAUUGGCUUGUCCUGGUCUCUUUUUCAUGUCCAGCCCCUGAUGUGUGUCCAUUGGUGUGAGCUUCCCCUUCCCUCCUCCCCUUCUCUCCUGCUCGCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCUUAA
..((((.(..((((....((((.(..........).))))(((((((.(((((..((..((.((((((............................))))))))))..)))......((((((...(((......)))....)))((((((((..((..(((((...)))))))))))))))..))))))))))))))))..)))))........................................................................................... ( -62.59)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
CUGGCCAUUGGCUUGUCCUGGUCUCUUUUUCAUGUCCAGCCCCUGAUGUGUGUCCAUUGGUGUGAGCUUCCCCUUCCCUCCUCCCCUUCUCUCCUGCUCGCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUUUUUUCCUUNNNNNNNNNNNN
.((((.(..((((....((((.(..........).))))(((((((.(((((..((..((.((((((............................))))))))))..)))......((((((...(((......)))....)))((((((((..((..(((((...)))))))))))))))..))))))))))))))))..)))))............................................................................ ( -62.59)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
CUGUCCAUUGGCUUCUUCGGGUCUAUUUUUCAUGUCCAGCCCCUAAUGAGUGUCCAUUGGUUUUGUUAUUUCCACUCCCUCCUCCUACUCCACGGCUUUGCCCUGCCCAUGUUCUGUAUGUCUGUGUCCAUCCAUCUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUCAUCUCUCUCUCUCUCUUUUCAAAAAA
........((((.......((.(..........).))((((((..(((..((..(((.((.................................(((........)))((((.....)))))).)))..))..)))..(((((.(((((((((((..((((((...))))).)...)))))))).))))))))))))))...))))................................. ( -53.70)
>consensus
_CUGGCCAUUGGCUUGUCCUGGUCUCUUUUUCAUGUCCAGCCCCUGAUGUGUGUCCAUUGGUGU_GAGCUUCCCCUUCCCUCCUCCCCUUCUCUCCUGCUC_GCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCA____________________________________________________UUUUUCUUU_____________________
.........((((.......((.(..........).))((((((.((((..((..(((.((((((((((............................)))))))...))).)))...))..))))((((......))))..(((((.(((((((((((..((((((...))))).)...)))))))).))))))))))))))...))))........................................................................................... (-50.72 = -52.09 +   1.38)

481656_0.rnaz

RNAalifold consensus structure

Secondary Structure Dot Plot
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Stefan Washietl
Last modified: Thu Aug 12 14:35:44 CEST 2004