Index >

Results for CNB 481656_2

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            C-GCCCTGCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCA
481656_ENSG00000119866_HUMAN_9496_9947/1-454             C-GCCCTGCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCA
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          C-GCCCTGCCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCGCA
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      TTGCCCTGCCCATGTTCTGTATGTCTGTGTCCATCCAT-CTCCTGACGTTCAAGTTCGCA


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            GGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCANN
481656_ENSG00000119866_HUMAN_9496_9947/1-454             GGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCANN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          GGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTTTCANN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      GGGACGTCACGTCCGCACTTGAACTTGCAGCTCAGGGGGGCTTTTGCCATTTTTT-CATC


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTC
481656_ENSG00000119866_HUMAN_9496_9947/1-454             NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT------TTTTTCCTTN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      TC------------------------------------------------TCTCTCTCTC


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            TTNNNNNNNNNNNNNN----------GCCATGACGGCTCTCCCACAATTCATCTTCCCTG
481656_ENSG00000119866_HUMAN_9496_9947/1-454             NNNNNNNNNNNNNNGCTTAAAAAAAAGCCATGACGGCTCTCCCACAATTCATCTTCCCTG
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          NNNNNNNNNNN---------------GCCATGACGGCTCTCCCACAATTCATCTTCCCTG
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      TTTTCAAAAAA---------------GCCATGACGGCTATCCCACAATCCATCTTCCCTG


481656_ENSRNOG00000007049_RAT_9511_9952/1-454            CGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAAAGGCACTGATGAAGATATT
481656_ENSG00000119866_HUMAN_9496_9947/1-454             CGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAAAGGCACTGATGAAGATATT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454          CGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAAAGGCACTGATGAAGATATT
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454      CGCCATCTTTGTATTATTTCTAATTTATTTTGGATGTCAAA-GGCATTGATGAAGATATT

481656_2.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 300
 Mean pairwise identity:  81.21
 Mean single sequence MFE: -58.51
 Consensus MFE: -54.49
 Energy contribution: -54.17
 Covariance contribution:  -0.31
 Mean z-score:  -1.71
 Structure conservation index:   0.93
 SVM decision value:   1.22
 SVM RNA-class probability: 0.932280
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
CGCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUUUUUUUUCUUNNNNNNNNNNNNNNGCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUU
(((.......(((..(((((.(...(((((........(((((((.(((((((((((..((((((...))))).)...)))))))).))))))))))(((....))).............................................................................................)))))....).)))))..))).......)))..(((((..(......(((((......)))))((((....))))...)..)))))... ( -58.34)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
CGCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCUUAAAAAAAAGCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUU
(((.......(((..(((((.(...(((((......(((((((((.(((((((((((..((((((...))))).)...)))))))).))))))))))(((....))).......)).............................................................................((((......))))...)))))....).)))))..))).......)))..(((((..(......(((((......)))))((((....))))...)..)))))... ( -60.54)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
CGCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUUUUUUCCUUNNNNNNNNNNNNGCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUU
(((.......(((..(((((.(...(((((........(((((((.(((((((((((..((((((...))))).)...)))))))).))))))))))(((....)))..................................................................................)))))....).)))))..))).......)))..(((((..(......(((((......)))))((((....))))...)..)))))... ( -58.34)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
UUGCCCUGCCCAUGUUCUGUAUGUCUGUGUCCAUCCAUCUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUCAUCUCUCUCUCUCUCUUUUCAAAAAAGCCAUGACGGCUAUCCCACAAUCCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAGGCAUUGAUGAAGAUAUU
...........((.(((...((((((.((..((((((.........((((((((..((..(((((...))))))))))))))).....((.(((((((((....))).................................((((.....))))................)))))).))...........................)))))).)).))))))....))).))... ( -56.80)
>consensus
C_GCCCUGCCCAUGUUUUGUGUGUCUCUGUCCAUCCAGACUCCUGACGUUCAAGUUCGCAGGGACGUCACGUCCGCACUUGAACUUGCAGCUCAGGGGGGCUUUUGCCAUUUUUUUCA____________________________________________________UUUUUCUUU___________________________GCCAUGACGGCUCUCCCACAAUUCAUCUUCCCUGCGCCAUCUUUGUAUUAUUUCUAAUUUAUUUUGGAUGUCAAAAGGCACUGAUGAAGAUAUU
.......(((((((...........((((......))))(((((((.(((((((((((..((((((...))))).)...)))))))).))))))))))(((....)))....................................................................................................))))..))).............((((((...(.(((...((((.((....(((((......))))).)))))).))).)....))))))... (-54.49 = -54.17 +  -0.31) 

481656_2.rnaz

RNAalifold consensus structure

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