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Results for CNB 363131

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

363131_ENSG00000104313_HUMAN_8174_8295/1-126        CCCCCCCTGACAAGGGGAGG--AGGAGGATAGACCTGCA-GGAGGAAACAACAGTTGAGA
363131_ENSRNOG00000007590_RAT_8237_8360/1-126       CTCCTCTTGACAAGGGGAGGGGAGGAGGAGAGACCTGCA-GGAAGAAACAGCAGTTGAGC
363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126 -CCTTTCCGTCATTGGGCCGGGAGGAGGGAAGACCTGGAAGGAGGAAACAACGGTGGAGG
363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126     CCCCTCCTGACAAGGGGAGGGGAGGAGGATAGACCTGCA-GGAAGAAACAACAGTTGAGC
                                                      *     * **  ***  *  ******  ******* * *** ****** * ** *** 


363131_ENSG00000104313_HUMAN_8174_8295/1-126        CCTC-AACTTAAAGACAATATGCCTTTCACTGCTGCAGTATCCTCCTTTTTCTCTTTTGG
363131_ENSRNOG00000007590_RAT_8237_8360/1-126       CCTC-CACTTAAAGATACTATGCCTTTCCTGGCCGCAGTATCCTCCCTTTTCTCTTTTGG
363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126 GGTTGAACCTACAGACAATGTGCCTCTCTGTTCCACCGACTCCTCTCTT-----------
363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126     CCTC-CACTTAAAGACACTATGCCTTTCCTGGCTGCAGTATCCTCCCTTTTCTCGTTTGG
                                                      *   ** ** *** * * ***** **    *  * *  *****  **           


363131_ENSG00000104313_HUMAN_8174_8295/1-126        TTAAAA
363131_ENSRNOG00000007590_RAT_8237_8360/1-126       TTAAAA
363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126 ------
363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126     TTAAA-
                                                          


//

363131.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 126
 Mean pairwise identity:  73.03
 Mean single sequence MFE: -41.25
 Consensus MFE: -21.65
 Energy contribution: -23.40
 Covariance contribution:   1.75
 Mean z-score:  -2.22
 Structure conservation index:   0.52
 SVM decision value:   1.38
 SVM RNA-class probability: 0.949851
 Prediction: RNA

######################################################################

>363131_ENSG00000104313_HUMAN_8174_8295/1-126
CCCCCCCUGACAAGGGGAGGAGGAGGAUAGACCUGCAGGAGGAAACAACAGUUGAGACCUCAACUUAAAGACAAUAUGCCUUUCACUGCUGCAGUAUCCUCCUUUUUCUCUUUUGGUUAAAA
......(..(.((((((((((((((((((...((((((.((........((((((....)))))).((((.(.....).))))..)).)))))))))))))))))))))))))..)...... ( -44.40)
>363131_ENSRNOG00000007590_RAT_8237_8360/1-126
CUCCUCUUGACAAGGGGAGGGGAGGAGGAGAGACCUGCAGGAAGAAACAGCAGUUGAGCCCUCCACUUAAAGAUACUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUUUGGUUAAAA
(((((((.....)))))))(((((((((.(((..((((.(.......).))))(((((.......))))).((((((..(((......)))...))))))))))))))))))............ ( -40.20)
>363131_ENSDARG00000014259_ZEBRAFISH_7954_8061/1-126
CCUUUCCGUCAUUGGGCCGGGAGGAGGGAAGACCUGGAAGGAGGAAACAACGGUGGAGGGGUUGAACCUACAGACAAUGUGCCUCUCUGUUCCACCGACUCCUCUCUU
(((..(.(((....))).)..)))(((.....)))(..(((((....)..((((((((.((..((...((((.....))))..)).)).))))))))..))))..).. ( -38.50)
>363131_ENSMUSG00000025932_MOUSE_8197_8319/1-126
CCCCUCCUGACAAGGGGAGGGGAGGAGGAUAGACCUGCAGGAAGAAACAACAGUUGAGCCCUCCACUUAAAGACACUAUGCCUUUCCUGGCUGCAGUAUCCUCCCUUUUCUCGUUUGGUUAAA
((((((((......)))))))).((((((((...((((((((.(.(((....)))...)..)))...............(((......))))))))))))))))................... ( -41.90)
>consensus
CCCCUCCUGACAAGGGGAGGGGAGGAGGAUAGACCUGCA_GGAAGAAACAACAGUUGAGCCCUC_AACUUAAAGACAAUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUUUGGUUAAA_
((((((((......)))))))).((((((((.....(((.(((((.........(((((........)))))............))))).))).....)))))))).................... (-21.65 = -23.40 +   1.75) 

363131.rnaz

RNAalifold consensus structure

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