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Results for CNB 233356

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

233356_ENSG00000154358_HUMAN_7307_7376/1-72        -GGGTCACGGTGCCAACCGGTGATGCTTCCTCAGGGCGCGGGGAGTGGGGGGGAAATAGG
233356_ENSDARG00000022108_ZEBRAFISH_4192_4240/1-72 AGGATAGAGCCGTCCATCAGCTTCGCATCCTTAGGGTGGAGGAAGGGG------------
233356_ENSMUSG00000020452_MOUSE_8921_8968/1-72     TAAGGCA-GGTGCCCGGGGCCTTACGGTCCATGACCTGAGCCATGAGG------------
233356_SINFRUG00000147616_FUGU_2020_2066/1-72      AAAGGAA-AGAATCGGCAGCTGGTGCT-CGACAGTGTAGAAAAGAAAG------------
233356_ENSRNOG00000008975_RAT_8939_8986/1-72       CAAGGCA-GGTGTTCGGAGCCTTACGGTCCATGACATGAGCCACGAGG------------
                                                                               *                  *            


233356_ENSG00000154358_HUMAN_7307_7376/1-72        ATGTGTGGAGG-
233356_ENSDARG00000022108_ZEBRAFISH_4192_4240/1-72 -----------A
233356_ENSMUSG00000020452_MOUSE_8921_8968/1-72     -----------A
233356_SINFRUG00000147616_FUGU_2020_2066/1-72      -----------A
233356_ENSRNOG00000008975_RAT_8939_8986/1-72       -----------A
                                                               


//

233356.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 72
 Mean pairwise identity:  35.75
 Mean single sequence MFE: -13.90
 Consensus MFE:  -1.31
 Energy contribution:  -1.23
 Covariance contribution:  -0.08
 Mean z-score:  -0.40
 Structure conservation index:   0.09
 SVM decision value:  -0.04
 SVM RNA-class probability: 0.512137
 Prediction: RNA

######################################################################

>233356_ENSG00000154358_HUMAN_7307_7376/1-72
GGGUCACGGUGCCAACCGGUGAUGCUUCCUCAGGGCGCGGGGAGUGGGGGGGAAAUAGGAUGUGUGGAGG
(.((((((((....))).))))).)((((((....(((.....)))..))))))................ ( -19.40)
>233356_ENSDARG00000022108_ZEBRAFISH_4192_4240/1-72
AGGAUAGAGCCGUCCAUCAGCUUCGCAUCCUUAGGGUGGAGGAAGGGGA
.((((......)))).((..((((.(((((...)))))))))...)).. ( -13.10)
>233356_ENSMUSG00000020452_MOUSE_8921_8968/1-72
UAAGGCAGGUGCCCGGGGCCUUACGGUCCAUGACCUGAGCCAUGAGGA
...(((((((.(...(((((....)))))..)))))..)))....... ( -16.70)
>233356_SINFRUG00000147616_FUGU_2020_2066/1-72
AAAGGAAAGAAUCGGCAGCUGGUGCUCGACAGUGUAGAAAAGAAAGA
...........((.(((.(((........)))))).))......... (  -5.90)
>233356_ENSRNOG00000008975_RAT_8939_8986/1-72
CAAGGCAGGUGUUCGGAGCCUUACGGUCCAUGACAUGAGCCACGAGGA
...(((..(((((.(((.((....)))))..)))))..)))....... ( -14.40)
>consensus
AAAGGCA_GGUGUCCGCAGCCUUAGCGUCCAUAGCGUGAGCCAAGAGG_______________________A
............((((((................))))))................................ ( -1.31 =  -1.23 +  -0.08) 

233356.rnaz

RNAalifold consensus structure

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