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Results for CNB 233460-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


233460_ENSG00000154358_HUMAN_7192_7277/1-86      TTCCCGTCCTTGTACCACATCACCTCCGTCTGGGCCTGAGCCACCTCGCAGCTGAGTGTG
233460_ENSMUSG00000020452_MOUSE_6160_6245/1-86   TTCCCGTCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCGCAGCTCAGTGTG
233460_ENSDARG00000022108_ZEBRAFISH_735_818/1-86 -TCTTATTTTTCCTCCAGATGACTTTGGCTCCAGACTTGGCAAGTTCACACCGAAACACT
233460_ENSRNOG00000008975_RAT_3479_3564/1-86     TTCCCATCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCACAGCTCAGTGTG
233460_SINFRUG00000147616_FUGU_1538_1623/1-86    TTGCCATCTTTGTACCATTTCACTTCTGTTTTCCTATCGGCTACTTCACAGCTCAGAGTG
                                                  *    *  **   ***  * ** *  *        *  ** *  ** ** *  *     


233460_ENSG00000154358_HUMAN_7192_7277/1-86      GTGCTGGCCCCCGCCTGGGCCTGCAC
233460_ENSMUSG00000020452_MOUSE_6160_6245/1-86   GCGCTGGCCCCAGCCTCTGCCTTCAC
233460_ENSDARG00000022108_ZEBRAFISH_735_818/1-86 GCATTTTCCCCAGTTTCAGTTTCCA-
233460_ENSRNOG00000008975_RAT_3479_3564/1-86     GCACTGGCCCCGGCCTCTGCCTTCAC
233460_SINFRUG00000147616_FUGU_1538_1623/1-86    GCTCTCTGGGACAAGATGGCTTTCAC
                                                 *   *             *  * ** 

233460-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 86
 Mean pairwise identity:  63.72
 Mean single sequence MFE: -23.70
 Consensus MFE: -13.62
 Energy contribution: -12.74
 Covariance contribution:  -0.88
 Mean z-score:  -1.36
 Structure conservation index:   0.57
 SVM decision value:   0.24
 SVM RNA-class probability: 0.650398
 Prediction: RNA

######################################################################

>233460_ENSG00000154358_HUMAN_7192_7277/1-86
UUCCCGUCCUUGUACCACAUCACCUCCGUCUGGGCCUGAGCCACCUCGCAGCUGAGUGUGGUGCUGGCCCCCGCCUGGGCCUGCAC
...........(((((((((((.((.((....(((....)))....)).)).))).)))))))).(((((......)))))..... ( -32.20)
>233460_ENSMUSG00000020452_MOUSE_6160_6245/1-86
UUCCCGUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCGCAGCUCAGUGUGGCGCUGGCCCCAGCCUCUGCCUUCAC
.........................(((.(((((((.(.(((((((........)).))))).).)).)))))...)))....... ( -24.80)
>233460_ENSDARG00000022108_ZEBRAFISH_735_818/1-86
UCUUAUUUUUCCUCCAGAUGACUUUGGCUCCAGACUUGGCAAGUUCACACCGAAACACUGCAUUUUCCCCAGUUUCAGUUUCCA
................(..((((..((((...((....(((..(((.....)))....)))....))...))))..))))..). (  -8.90)
>233460_ENSRNOG00000008975_RAT_3479_3564/1-86
UUCCCAUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCGGCCUCUGCCUUCAC
...........................((..(((((.((((((((.(((......))).))...)))))).)))))..))...... ( -28.70)
>233460_SINFRUG00000147616_FUGU_1538_1623/1-86
UUGCCAUCUUUGUACCAUUUCACUUCUGUUUUCCUAUCGGCUACUUCACAGCUCAGAGUGGCUCUCUGGGACAAGAUGGCUUUCAC
..((((((((.((.((......................((((.......))))(((((.....)))))))))))))))))...... ( -23.90)
>consensus
UUCCCAUCCUUGAACCAUAUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCAGCCUCGGCCUUCAC
...........................((..(((((...(((((((........)).)))))...)))))..))............ (-13.62 = -12.74 +  -0.88) 

233460-rev.rnaz

RNAalifold consensus structure

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