Index >

Results for CNB 414286-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


414286_ENSG00000140416_HUMAN_5571_5706/1-137    TTACATCGGTGGCCTTTTTCTCTGCCAGCTCCAGCTTCTCCTGGGCATCTTTGAGAGCCT
414286_SINFRUG00000130484_FUGU_7336_7470/1-137  -TACGTCTGTGGCTTTCTTTTCTGCCAGTTCAAGCTTCTCCTGAGCATCTTTAAGAGCCT
414286_ENSRNOG00000018184_RAT_5838_5973/1-137   TTACATCTGTGGCCTTTTTCTCCGCCAGCTCCAGTTTCTCCTGGGCATCTTTGAGAGCCT
414286_ENSMUSG00000032366_MOUSE_6042_6176/1-137 -TACATCTGTGGCCTTTTTCTCCGCCAGCTCCAGTTTCTCCTGGGCATCTTTGAGAGCCT
                                                 *** ** ***** ** ** ** ***** ** ** ******** ******** *******


414286_ENSG00000140416_HUMAN_5571_5706/1-137    CAGAGTATTTGTCCAGTTCATCTTCGGTGCCCTTGAGTTTCTTTTGCAGTGACACCAGCT
414286_SINFRUG00000130484_FUGU_7336_7470/1-137  CGGAGAACTTGTCCAACTCATCTTCTGTCCCCTTTAATTTCTTCTGCAGGGCTACCAAAT
414286_ENSRNOG00000018184_RAT_5838_5973/1-137   CGGAGTATTTGTCCAGTTCATCTTCAGTGCCCTTGAGTTTCTTTTGCAGTGACACCAGCT
414286_ENSMUSG00000032366_MOUSE_6042_6176/1-137 CGGAGTATTTGTCCAGTTCATCTTCAGTGCCCTTGAGTTTCTTTTGCAGTGACACCAGCT
                                                * *** * *******  ******** ** ***** * ****** ***** *  ****  *


414286_ENSG00000140416_HUMAN_5571_5706/1-137    CATCTTCCAGCTGGG-A
414286_SINFRUG00000130484_FUGU_7336_7470/1-137  CGTCCTCAAGCTGAGG-
414286_ENSRNOG00000018184_RAT_5838_5973/1-137   CATCTTCCAGCTGGG-A
414286_ENSMUSG00000032366_MOUSE_6042_6176/1-137 CATCTTCCAGCTGGG-A
                                                * ** ** ***** *  

414286-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 137
 Mean pairwise identity:  87.29
 Mean single sequence MFE: -36.22
 Consensus MFE: -25.01
 Energy contribution: -26.08
 Covariance contribution:   1.06
 Mean z-score:  -1.46
 Structure conservation index:   0.69
 SVM decision value:  -0.05
 SVM RNA-class probability: 0.509414
 Prediction: RNA

######################################################################

>414286_ENSG00000140416_HUMAN_5571_5706/1-137
UUACAUCGGUGGCCUUUUUCUCUGCCAGCUCCAGCUUCUCCUGGGCAUCUUUGAGAGCCUCAGAGUAUUUGUCCAGUUCAUCUUCGGUGCCCUUGAGUUUCUUUUGCAGUGACACCAGCUCAUCUUCCAGCUGGGA
((((...((..(.........)..)).((...((...(((..(((((((...((((((..((((...))))....)))).))...)))))))..)))...))...)).))))..((((((........)))))).. ( -38.40)
>414286_SINFRUG00000130484_FUGU_7336_7470/1-137
UACGUCUGUGGCUUUCUUUUCUGCCAGUUCAAGCUUCUCCUGAGCAUCUUUAAGAGCCUCGGAGAACUUGUCCAACUCAUCUUCUGUCCCCUUUAAUUUCUUCUGCAGGGCUACCAAAUCGUCCUCAAGCUGAGG
........((((..........))))(..((((.((((((.(((..((.....))..)))))))))))))..)..........................((((.(((((((.........)))))...)).)))) ( -30.90)
>414286_ENSRNOG00000018184_RAT_5838_5973/1-137
UUACAUCUGUGGCCUUUUUCUCCGCCAGCUCCAGUUUCUCCUGGGCAUCUUUGAGAGCCUCGGAGUAUUUGUCCAGUUCAUCUUCAGUGCCCUUGAGUUUCUUUUGCAGUGACACCAGCUCAUCUUCCAGCUGGGA
((((.....((((..........))))((...((...(((..((((((....((((((...(((.......))).)))).))....))))))..)))...))...)).))))..((((((........)))))).. ( -38.30)
>414286_ENSMUSG00000032366_MOUSE_6042_6176/1-137
UACAUCUGUGGCCUUUUUCUCCGCCAGCUCCAGUUUCUCCUGGGCAUCUUUGAGAGCCUCGGAGUAUUUGUCCAGUUCAUCUUCAGUGCCCUUGAGUUUCUUUUGCAGUGACACCAGCUCAUCUUCCAGCUGGGA
(((.....((((..........))))((...((...(((..((((((....((((((...(((.......))).)))).))....))))))..)))...))...)).)))...((((((........)))))).. ( -37.30)
>consensus
_UACAUCUGUGGCCUUUUUCUCCGCCAGCUCCAGCUUCUCCUGGGCAUCUUUGAGAGCCUCGGAGUAUUUGUCCAGUUCAUCUUCAGUGCCCUUGAGUUUCUUUUGCAGUGACACCAGCUCAUCUUCCAGCUGGG_A
.........((((..........))))..(((((((....(((((((.(((((((...)))))))....))))))).......(((.(((....(.....)....))).)))................))))))).. (-25.01 = -26.08 +   1.06) 

414286-rev.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF