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Results for CNB 461749

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

461749_ENSMUSG00000034255_MOUSE_8785_8897/1-115     -CCCTCCAGCTTCGAAGCCGAGATGGCTC-GGAGTACCTGATCCAGCACGACTCCGAAGC
461749_SINFRUG00000131017_FUGU_9484_9597/1-115      CCTCCCCAG-TTAAAAACTAAGAACGCGGTGGAATTCCTGATACAGTACGACACAGAAAG
461749_ENSRNOG00000028569_RAT_8775_8886/1-115       -CCCTCCAGCTCCGGAGCCGAGATGGCTC-AGAGTACCTGATCCAGCATGACTCAGAGGC
461749_ENSDARG00000006344_ZEBRAFISH_6914_7025/1-115 -TCATTCAGCTTAAGACTCGGACTGGTGC-CGAATACTTGATCCAGTACGACACCGATAG
                                                          *** *    *         *     ** * * **** *** * *** * **   


461749_ENSMUSG00000034255_MOUSE_8785_8897/1-115     CATCATCAGCACCTGGCACAAAGCCATTGCCGAAGGCATCTCAGAGCTGGTAGGC
461749_SINFRUG00000131017_FUGU_9484_9597/1-115      CATCATTGTTGACTGGCACCGAGTCCTGACCGATACCATACGACAACTGGTGAGA
461749_ENSRNOG00000028569_RAT_8775_8886/1-115       CATCATCAGCACCTGGCACAAGGCCATTGCCGAAGGCATCGAGGAGCTGGTAGG-
461749_ENSDARG00000006344_ZEBRAFISH_6914_7025/1-115 CATCATCCAAGACTGGCATAAAGTTATCTTAGATACCATACACCAGCTGGTGAG-
                                                    ******      ******    *   *    **   ***     * *****  * 


//

461749.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 115
 Mean pairwise identity:  65.01
 Mean single sequence MFE: -39.80
 Consensus MFE: -17.40
 Energy contribution: -19.52
 Covariance contribution:   2.13
 Mean z-score:  -2.61
 Structure conservation index:   0.44
 SVM decision value:   1.95
 SVM RNA-class probability: 0.983664
 Prediction: RNA

######################################################################

>461749_ENSMUSG00000034255_MOUSE_8785_8897/1-115
CCCUCCAGCUUCGAAGCCGAGAUGGCUCGGAGUACCUGAUCCAGCACGACUCCGAAGCCAUCAUCAGCACCUGGCACAAAGCCAUUGCCGAAGGCAUCUCAGAGCUGGUAGGC
.(((((((((..((.(((..(((((((((((((..(((...)))....)))))).))))))).((.(((..((((.....)))).))).)).)))...))..)))))).))). ( -53.40)
>461749_SINFRUG00000131017_FUGU_9484_9597/1-115
CCUCCCCAGUUAAAAACUAAGAACGCGGUGGAAUUCCUGAUACAGUACGACACAGAAAGCAUCAUUGUUGACUGGCACCGAGUCCUGACCGAUACCAUACGACAACUGGUGAGA
.(((.((((((........((.((.((((((....)).....((((.(((((..((.....))..)))))))))..)))).)).))...((........))..)))))).))). ( -28.40)
>461749_ENSRNOG00000028569_RAT_8775_8886/1-115
CCCUCCAGCUCCGGAGCCGAGAUGGCUCAGAGUACCUGAUCCAGCAUGACUCAGAGGCCAUCAUCAGCACCUGGCACAAGGCCAUUGCCGAAGGCAUCGAGGAGCUGGUAGG
.(((((((((((.(((((..((((((((.((((..(((...)))....)))).)).)))))).((.(((..((((.....)))).))).)).))).))..)))))))).))) ( -52.30)
>461749_ENSDARG00000006344_ZEBRAFISH_6914_7025/1-115
UCAUUCAGCUUAAGACUCGGACUGGUGCCGAAUACUUGAUCCAGUACGACACCGAUAGCAUCAUCCAAGACUGGCAUAAAGUUAUCUUAGAUACCAUACACCAGCUGGUGAG
((((.(((((......(((.(((((...(((....)))..))))).)))....((((((...(((((....))).))...))))))................))))))))). ( -25.10)
>consensus
_CCCUCCAGCUUAAAAGCCGAGAUGGCGC_GGAAUACCUGAUCCAGCACGACACAGAAACCAUCAUCAGCAACUGGCACAAAGCCAUUGCCGAAACCAUACAACAGCUGGUAAG_
..((((((((((.........(((((((...((((..(((...)))....))))...))))))).((.((((.((((.....)))))))).))..........))))))).))). (-17.40 = -19.52 +   2.13) 

461749.rnaz

RNAalifold consensus structure

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