Index >

Results for CNB 145953-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


145953_ENSG00000169797_HUMAN_9708_9826/1-125        -TTCCCACACTCCGC-GGCCAATGGCCGGGC-GGGCCGCAC-AAAGGCGCCGGCCCATTA
145953_ENSRNOG00000013850_RAT_9660_9778/1-125       -TTCCCACACTCAGC-GGCCAATGGCGGCGC-CGGCCGCAC-AAAGGCGCCGGCCCATTA
145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125 GTTCTCACAGTCTGC-AGCCAATGGGAGAGC-TCTAAAGAC-AGAAGTAGCAGAGGGCCG
145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125     -TTCCCACACTCGGC-GGCCAATGGCGGCGC-CGGCCGCAC-AAAGGCGCCGGCCCATTA
145953_SINFRUG00000138848_FUGU_3852_3976/1-125      TTTCTCACAGTCCCCAGGCCAATGGGAACGCTGGGAAGGGCTTTGAGGAACGCAGGGCTG
                                                     *** **** **  *  ********    **         *     *   *         


145953_ENSG00000169797_HUMAN_9708_9826/1-125        GCGCACGCTAAATTGCCTGTGAATTGGCGCGGGCACAATGGGC-GCTCCCCAAGGAGCAG
145953_ENSRNOG00000013850_RAT_9660_9778/1-125       GCGCACGCTAAATTGCCTGTGAATTGGCGCGGGCACAATGGTC-GCTCCCCGAGGAGCAG
145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125 CCACATGCTAAATGACGTGCTTATTGCTCAGGGAACAATGGGCTGGTCTTTGGGGAGCAG
145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125     GCGCACGCTAAATTGCCTGTGAATTGGCGCGGGCACAATGGTC-GCTCCCCGAGGAGCAG
145953_SINFRUG00000138848_FUGU_3852_3976/1-125      CCACATGCTCAATGAAGTGTTTATAGCCGTGGGGACAATGAGTGTGTCTCCGGGGAGCAG
                                                     * ** *** ***    **   ** *    *** ******      **     *******


145953_ENSG00000169797_HUMAN_9708_9826/1-125        GTGG-
145953_ENSRNOG00000013850_RAT_9660_9778/1-125       GTGG-
145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125 GTGGA
145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125     GTGG-
145953_SINFRUG00000138848_FUGU_3852_3976/1-125      GTGGA
                                                    **** 

145953-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 125
 Mean pairwise identity:  70.81
 Mean single sequence MFE: -51.58
 Consensus MFE: -21.54
 Energy contribution: -22.70
 Covariance contribution:   1.16
 Mean z-score:  -1.68
 Structure conservation index:   0.42
 SVM decision value:  -0.04
 SVM RNA-class probability: 0.514276
 Prediction: RNA

######################################################################

>145953_ENSG00000169797_HUMAN_9708_9826/1-125
UUCCCACACUCCGCGGCCAAUGGCCGGGCGGGCCGCACAAAGGCGCCGGCCCAUUAGCGCACGCUAAAUUGCCUGUGAAUUGGCGCGGGCACAAUGGGCGCUCCCCAAGGAGCAGGUGG
...((((...((.(((((...)))))))((((((.......))).)))((((((((((....)))))..((((((((......))))))))...)))))(((((....)))))..)))) ( -59.10)
>145953_ENSRNOG00000013850_RAT_9660_9778/1-125
UUCCCACACUCAGCGGCCAAUGGCGGCGCCGGCCGCACAAAGGCGCCGGCCCAUUAGCGCACGCUAAAUUGCCUGUGAAUUGGCGCGGGCACAAUGGUCGCUCCCCGAGGAGCAGGUGG
...((((.......(((((.((..((.((((((.((......)))))))))).(((((....)))))..((((((((......)))))))))).)))))(((((....)))))..)))) ( -57.80)
>145953_ENSDARG00000009822_ZEBRAFISH_2161_2282/1-125
GUUCUCACAGUCUGCAGCCAAUGGGAGAGCUCUAAAGACAGAAGUAGCAGAGGGCCGCCACAUGCUAAAUGACGUGCUUAUUGCUCAGGGAACAAUGGGCUGGUCUUUGGGGAGCAGGUGGA
.......((.(((((..((....))....((((((((((.....(((((..((....))...))))).....((.((((((((.((...)).)))))))))))))))))))).))))))).. ( -36.70)
>145953_ENSMUSG00000048001_MOUSE_9732_9850/1-125
UUCCCACACUCGGCGGCCAAUGGCGGCGCCGGCCGCACAAAGGCGCCGGCCCAUUAGCGCACGCUAAAUUGCCUGUGAAUUGGCGCGGGCACAAUGGUCGCUCCCCGAGGAGCAGGUGG
...((((....((((.((..(((((((....))))).))..))))))((((..(((((....)))))..((((((((......))))))))....))))(((((....)))))..)))) ( -57.80)
>145953_SINFRUG00000138848_FUGU_3852_3976/1-125
UUUCUCACAGUCCCCAGGCCAAUGGGAACGCUGGGAAGGGCUUUGAGGAACGCAGGGCUGCCACAUGCUCAAUGAAGUGUUUAUAGCCGUGGGGACAAUGAGUGUGUCUCCGGGGAGCAGGUGGA
(((((((..((.((((......)))).))..)))))))(((((((.......))))))).((((.(((((.((((.....))))..((.((((((((.......))))))))))))))).)))). ( -46.50)
>consensus
_UUCCCACACUCCGC_GGCCAAUGGCAGCGC_CGGCCGCAC_AAAGGCGCCGGCCCAUUAGCGCACGCUAAAUUGCCUGUGAAUUGGCGCGGGCACAAUGGGC_GCUCCCCGAGGAGCAGGUGG_
....((((.........(((..((((........))))........(((((((..(((.((.(((........))))))))..))))))).)))..........(((((....)))))..)))). (-21.54 = -22.70 +   1.16) 

145953-rev.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF