Index >

Results for CNB 244427_1-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


244427_ENSMUSG00000036888_MOUSE_6983_7489/1-510     TGAGAAGGGCTGCGGAAGATAATTTATAGGTTTTAATTACTCTTCATTCCGCCTGATCAG
244427_ENSRNOG00000002457_RAT_6069_6575/1-510       TGAGAAGGGCTGCGGAAGATAATTTATAGGTTTTAATTACTCTTCATTCCGCCTGATCAG
244427_ENSDARG00000015073_ZEBRAFISH_4427_4928/1-510 TGAGAGGGACTGCAAAAGATAATTTATAGGTTTTAATTAGCGCCCATTCCGCCTGATCAG
244427_ENSG00000163064_HUMAN_6937_7444/1-510        CGAGAAGGGCTGCGGAAGATAATTTATAGGTTTTAATTACTCTTCATTCCGCCTGATCAG
                                                     **** ** ****  ************************     ****************


244427_ENSMUSG00000036888_MOUSE_6983_7489/1-510     CTTGGCGTTCATCACAGGCCTGTGAATAAAACCCTGGTCAAAAGCTCTGTCACATAGCAC
244427_ENSRNOG00000002457_RAT_6069_6575/1-510       CTTGGCGTTCATCACAGGCCTGTGAATAAAACCCTGGTCAAAAGCTCTGTCACATAGCGC
244427_ENSDARG00000015073_ZEBRAFISH_4427_4928/1-510 CTTGGCGTTCATCACTAGCGAGTGAATAAAAGCC-GGTCAAAAGCACTGTCACTACCCGC
244427_ENSG00000163064_HUMAN_6937_7444/1-510        CTTGGCGTTCATCACAGGCCTGTGAATAAAACCCTGGTCAAAAGCTCTGTCACATCGCGC
                                                    ***************  **  ********** ** ********** *******    * *


244427_ENSMUSG00000036888_MOUSE_6983_7489/1-510     TGGCAAGACGTTTAATCAAAGTGA-NNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGTACG
244427_ENSRNOG00000002457_RAT_6069_6575/1-510       TGGCAAGACGTTTAATCAAAGTGA-NNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGTACG
244427_ENSDARG00000015073_ZEBRAFISH_4427_4928/1-510 TGGCAGGGCGCTTTATCAAGGTAAGCAGGGCCGTATTACACGAGGTGTAGA--GGCAACG
244427_ENSG00000163064_HUMAN_6937_7444/1-510        TGGCAAGACGCTTAATCAAAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCCACG
                                                    ***** * ** ** ***** ** *                                 ***


244427_ENSMUSG00000036888_MOUSE_6983_7489/1-510     TAATTTCCAGCCAGCTGATAAAGCCAGCTGAATAATGCGGCGGCCCTTTGGAGACACCAT
244427_ENSRNOG00000002457_RAT_6069_6575/1-510       TAATTTCCAGCCAGCTGATAAAGCCAGCTGAATAATGCGGCGGCCCTTTGGAGACACCAT
244427_ENSDARG00000015073_ZEBRAFISH_4427_4928/1-510 TAATTTCCCCAGTGCTGATAAAGCCCGTTGAATAATGCCGGAGTCATCT-GAGACACCAT
244427_ENSG00000163064_HUMAN_6937_7444/1-510        TAATTTCCAGCCAGCTGATAAAGCCAGCTGAATAATACGGCGGCCCTTTGGAGACACCAT
                                                    ********     ************ * ******** * *  * * * * **********


244427_ENSMUSG00000036888_MOUSE_6983_7489/1-510     TTACAGAAATGACTTTATTGACGGCTTAACGTCGGTAATTCATTTTACCTTTCATGTAGT
244427_ENSRNOG00000002457_RAT_6069_6575/1-510       TTACAGAAATGACTTTATTGACGGCTTAACGTCGGTAATTCATTTTACCTTTCATGTAGT
244427_ENSDARG00000015073_ZEBRAFISH_4427_4928/1-510 TTACTGAAATGACTTTATTGACGACTTAACGTCGGTAATTCATTTT-CCCTTCACGTATC
244427_ENSG00000163064_HUMAN_6937_7444/1-510        TTACAGAAATGACTTTATTGACGGCTTAACGTCGGTAATTCATTTTACCTTTCATGTAGT
                                                    **** ****************** ********************** ** **** ***  

244427_1-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 300
 Mean pairwise identity:  85.77
 Mean single sequence MFE: -80.82
 Consensus MFE: -61.47
 Energy contribution: -61.97
 Covariance contribution:   0.50
 Mean z-score:  -1.38
 Structure conservation index:   0.76
 SVM decision value:  -0.06
 SVM RNA-class probability: 0.505275
 Prediction: RNA

######################################################################

>244427_ENSMUSG00000036888_MOUSE_6983_7489/1-510
UGAGAAGGGCUGCGGAAGAUAAUUUAUAGGUUUUAAUUACUCUUCAUUCCGCCUGAUCAGCUUGGCGUUCAUCACAGGCCUGUGAAUAAAACCCUGGUCAAAAGCUCUGUCACAUAGCACUGGCAAGACGUUUAAUCAAAGUGANNNNNNNNNNNNNNNNNNNNNNNNNNUCCUGUACGUAAUUUCCAGCCAGCUGAUAAAGCCAGCUGAAUAAUGCGGCGGCCCUUUGGAGACACCAUUUACAGAAAUGACUUUAUUGACGGCUUAACGUCGGUAAUUCAUUUUACCUUUCAUGUAGU
...((((((((((.((((((((((..........))))).)))))....(((....((((((.(((..((((((((....)))))........((((......(((.((...)).))).((((....((((.............................................)))).....)))))))).)))....))))))))).....)))))))))))))(....).....((((((((((((..(((((((((......))))))))).)))))))........))))). ( -77.78)
>244427_ENSRNOG00000002457_RAT_6069_6575/1-510
UGAGAAGGGCUGCGGAAGAUAAUUUAUAGGUUUUAAUUACUCUUCAUUCCGCCUGAUCAGCUUGGCGUUCAUCACAGGCCUGUGAAUAAAACCCUGGUCAAAAGCUCUGUCACAUAGCGCUGGCAAGACGUUUAAUCAAAGUGANNNNNNNNNNNNNNNNNNNNNNNNNNUCCUGUACGUAAUUUCCAGCCAGCUGAUAAAGCCAGCUGAAUAAUGCGGCGGCCCUUUGGAGACACCAUUUACAGAAAUGACUUUAUUGACGGCUUAACGUCGGUAAUUCAUUUUACCUUUCAUGUAGU
...((((((((((.((((((((((..........))))).)))))....(((....((((((.(((.....(((((....)))))...........((((...(((.((...)).)))((((((..((.(((.......((.((..........................))))......))).))..))))))))))...))))))))).....)))))))))))))(....).....((((((((((((..(((((((((......))))))))).)))))))........))))). ( -80.59)
>244427_ENSDARG00000015073_ZEBRAFISH_4427_4928/1-510
UGAGAGGGACUGCAAAAGAUAAUUUAUAGGUUUUAAUUAGCGCCCAUUCCGCCUGAUCAGCUUGGCGUUCAUCACUAGCGAGUGAAUAAAAGCCGGUCAAAAGCACUGUCACUACCCGCUGGCAGGGCGCUUUAUCAAGGUAAGCAGGGCCGUAUUACACGAGGUGUAGAGGCAACGUAAUUUCCCCAGUGCUGAUAAAGCCCGUUGAAUAAUGCCGGAGUCAUCUGAGACACCAUUUACUGAAAUGACUUUAUUGACGACUUAACGUCGGUAAUUCAUUUUCCCUUCACGUAUC
(((.(((((...((..((((........(((.(((.(((((((((.....((.(((((.((((...(((((((......)).)))))..)))).)))))...))..(((((........)))))))))((((.((....)))))).((((..((((((((..((......(....).......))...))).)))))..))))))))).))).)))((.(((......))).))))))..))((((((..(((((((((......))))))))).))))))))))))))...... ( -85.12)
>244427_ENSG00000163064_HUMAN_6937_7444/1-510
CGAGAAGGGCUGCGGAAGAUAAUUUAUAGGUUUUAAUUACUCUUCAUUCCGCCUGAUCAGCUUGGCGUUCAUCACAGGCCUGUGAAUAAAACCCUGGUCAAAAGCUCUGUCACAUCGCGCUGGCAAGACGCUUAAUCAAAGUGANNNNNNNNNNNNNNNNNNNNNNNNNNNUCCUCCACGUAAUUUCCAGCCAGCUGAUAAAGCCAGCUGAAUAAUACGGCGGCCCUUUGGAGACACCAUUUACAGAAAUGACUUUAUUGACGGCUUAACGUCGGUAAUUCAUUUUACCUUUCAUGUAGU
...(((((((((((((.((.........(((((((..............((((..........))))....(((((....))))).))))))).((((...(((((((((((........)))).))).)))).)))).................................)).))).((((.....((((..(((.....)))..)))).....))))))))))))))(....).....((((((((((((..(((((((((......))))))))).)))))))........))))). ( -79.80)
>consensus
UGAGAAGGGCUGCGGAAGAUAAUUUAUAGGUUUUAAUUACUCUUCAUUCCGCCUGAUCAGCUUGGCGUUCAUCACAGGCCUGUGAAUAAAACCCUGGUCAAAAGCUCUGUCACAUAGCGCUGGCAAGACGCUUAAUCAAAGUGA___________________________UCCUCUACGUAAUUUCCAGCCAGCUGAUAAAGCCAGCUGAAUAAUGCGGCGGCCCUUUGGAGACACCAUUUACAGAAAUGACUUUAUUGACGGCUUAACGUCGGUAAUUCAUUUUACCUUUCAUGUAGU
.((((((((((((....(((........(((((((..............((((..........))))....(((((....))))).)))))))........(((((((((((........)))).))).)))).))).........................................((((.....((((..(((.....)))..)))).....))))))))))))))................(((((((..(((((((((......))))))))).))))))).....))....... (-61.47 = -61.97 +   0.50) 

244427_1-rev.rnaz

RNAalifold consensus structure

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