Index >

Results for CNB 363361-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


363361_ENSG00000168826_HUMAN_7071_7228/1-158    CCACCTAAAATACTGGCTGAATGCTGCCAGGACATTCTTATGCGCTTTAAAGCAGACTCC
363361_ENSMUSG00000029127_MOUSE_3950_4107/1-158 TCACCTGAAATACTGGCTGAAGGCTGCCAGGACATTCTTGTGTGCTTTGAAGCAGACGCC
363361_SINFRUG00000131011_FUGU_1000_1156/1-158  -CACCTGAAGTAGGAGCTGAAGGCTGCCAGGACATTTTTGTGTGCTTTGAAGCATACACC
363361_ENSRNOG00000005633_RAT_6999_7154/1-158   -CACCTGAAATACTGGCTGAAGGCTGCCAGCACATTCTTGTGTGCTTTGAAGCACACGCC
                                                 ***** ** **   ****** ******** ***** ** ** ***** ***** ** **


363361_ENSG00000168826_HUMAN_7071_7228/1-158    TTTTACCACCAACATACAGTCACAAAGCAGGCCTTGGATTCGCTGCTCATGCAGTTGCTG
363361_ENSMUSG00000029127_MOUSE_3950_4107/1-158 CCTCACCACCAGCATGCAGTCACAAAGCAGGCCCTGGATCCGCTGCTCTCGCAGCTGCTG
363361_SINFRUG00000131011_FUGU_1000_1156/1-158  TTTCACAACCAGCATGCAGTCACAAAGGAGCCCCTGAATCCTCTGCTCCTGAAGCTGCTG
363361_ENSRNOG00000005633_RAT_6999_7154/1-158   CCTCACCACCAGCATGCAGTCACAAAGCAGGCCCTGGATCCGCTGCTCTCGCAGCTGCTG
                                                  * ** **** *** *********** ** ** ** ** * ******  * ** *****


363361_ENSG00000168826_HUMAN_7071_7228/1-158    GAGCAGATGGCAGCTGTGGGTAGCAACAGGGTCCATGC
363361_ENSMUSG00000029127_MOUSE_3950_4107/1-158 CAGGAGGTGGCAGCTGTGAACAGCAACAGGGTCCATAC
363361_SINFRUG00000131011_FUGU_1000_1156/1-158  CAGCAGGTAGGAACTGTGGCTGGACAGAGTATCCATGG
363361_ENSRNOG00000005633_RAT_6999_7154/1-158   GAGGAGGTGGCAGCTATGAATAGCAACAGGGTCCATA-
                                                 ** ** * * * ** **    *  * **  *****  

363361-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 158
 Mean pairwise identity:  82.79
 Mean single sequence MFE: -56.77
 Consensus MFE: -39.03
 Energy contribution: -43.03
 Covariance contribution:   4.00
 Mean z-score:  -2.04
 Structure conservation index:   0.69
 SVM decision value:   0.82
 SVM RNA-class probability: 0.858061
 Prediction: RNA

######################################################################

>363361_ENSG00000168826_HUMAN_7071_7228/1-158
CCACCUAAAAUACUGGCUGAAUGCUGCCAGGACAUUCUUAUGCGCUUUAAAGCAGACUCCUUUUACCACCAACAUACAGUCACAAAGCAGGCCUUGGAUUCGCUGCUCAUGCAGUUGCUGGAGCAGAUGGCAGCUGUGGGUAGCAACAGGGUCCAUGC
............(((((........)))))..........((((((....))).((((...................)))).....)))(((((((.....(((((((..((((((((((.......)))))))))))))))))..)))))))..... ( -48.11)
>363361_ENSMUSG00000029127_MOUSE_3950_4107/1-158
UCACCUGAAAUACUGGCUGAAGGCUGCCAGGACAUUCUUGUGUGCUUUGAAGCAGACGCCCCUCACCACCAGCAUGCAGUCACAAAGCAGGCCCUGGAUCCGCUGCUCUCGCAGCUGCUGCAGGAGGUGGCAGCUGUGAACAGCAACAGGGUCCAUAC
...((((......((((((...((((...((.......(((.((((....)))).))).......))..))))...)))))).....))))...(((((((..((((.((((((((((..(.....)..))))))))))..))))...)))))))... ( -65.44)
>363361_SINFRUG00000131011_FUGU_1000_1156/1-158
CACCUGAAGUAGGAGCUGAAGGCUGCCAGGACAUUUUUGUGUGCUUUGAAGCAUACACCUUUCACAACCAGCAUGCAGUCACAAAGGAGCCCCUGAAUCCUCUGCUCCUGAAGCUGCUGCAGCAGGUAGGAACUGUGGCUGGACAGAGUAUCCAUGG
.(((((..((((.((((...((((((..((.......((((((((....))))))))..........)).....))))))....((((((....((....)).))))))..)))).))))..))))).((((((.((......)).))).))).... ( -53.73)
>363361_ENSRNOG00000005633_RAT_6999_7154/1-158
CACCUGAAAUACUGGCUGAAGGCUGCCAGCACAUUCUUGUGUGCUUUGAAGCACACGCCCCUCACCACCAGCAUGCAGUCACAAAGCAGGCCCUGGAUCCGCUGCUCUCGCAGCUGCUGGAGGAGGUGGCAGCUAUGAAUAGCAACAGGGUCCAUA
..((((.....(((((........))))).........(((((((....)))))))(((((((....(((((((((.........)))............(((((....)))))))))))..)))).))).((((....))))..))))....... ( -59.80)
>consensus
_CACCUGAAAUACUGGCUGAAGGCUGCCAGGACAUUCUUGUGUGCUUUGAAGCAGACGCCCCUCACCACCAGCAUGCAGUCACAAAGCAGGCCCUGGAUCCGCUGCUCUCGCAGCUGCUGCAGCAGGUGGCAGCUGUGAAUAGCAACAGGGUCCAUAC
...((((......((((((...((((............((((((((....))))))))...........))))...)))))).....))))...(((((((..((((.(((((((((((((.....)))))))))))))..))))...)))))))... (-39.03 = -43.03 +   4.00) 

363361-rev.rnaz

RNAalifold consensus structure

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