Index >

Results for CNB 391446-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


391446_ENSG00000104529_HUMAN_1690_1757/1-70   -GTCAAACAGGGCCTCGTAGAAGCCCCTCTCGGCTGCATCATACCGGGGCTTCTCCAGCC
391446_ENSMUSG00000022573_MOUSE_181_248/1-70  A-TCAAACAGGGCCTCATAGAAGCCCCTCTCAGCGGCATCGTACCGGGGCTTCTCCAGCC
391446_ENSRNOG00000008084_RAT_182_249/1-70    A-TCAAATAGGGCCTCATAGAAGCCCCTTTCAGCTGCATCATAACGGGGCTTTTCCAGCC
391446_SINFRUG00000136056_FUGU_7740_7804/1-70 G-TTGGCT---CCCTCGTAAAAGCGTTTTTCTGCTTCATCAAAGCGGTGTTTATCGAACC
                                                *         **** ** ****   * ** **  ****  * *** * ** ** * **


391446_ENSG00000104529_HUMAN_1690_1757/1-70   ACACCTCC-C
391446_ENSMUSG00000022573_MOUSE_181_248/1-70  ATACCTCC-C
391446_ENSRNOG00000008084_RAT_182_249/1-70    ATACCTCC-C
391446_SINFRUG00000136056_FUGU_7740_7804/1-70 ATACGTTCT-
                                              * ** * *  

391446-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 70
 Mean pairwise identity:  73.43
 Mean single sequence MFE: -17.07
 Consensus MFE: -12.06
 Energy contribution: -11.99
 Covariance contribution:  -0.06
 Mean z-score:  -1.62
 Structure conservation index:   0.71
 SVM decision value:   0.95
 SVM RNA-class probability: 0.888100
 Prediction: RNA

######################################################################

>391446_ENSG00000104529_HUMAN_1690_1757/1-70
GUCAAACAGGGCCUCGUAGAAGCCCCUCUCGGCUGCAUCAUACCGGGGCUUCUCCAGCCACACCUCCC
.........(((...(.(((((((((....((..........))))))))))))..)))......... ( -19.80)
>391446_ENSMUSG00000022573_MOUSE_181_248/1-70
AUCAAACAGGGCCUCAUAGAAGCCCCUCUCAGCGGCAUCGUACCGGGGCUUCUCCAGCCAUACCUCCC
.........(((.....(((((((((.....(((....)))...)))))))))...)))......... ( -21.70)
>391446_ENSRNOG00000008084_RAT_182_249/1-70
AUCAAAUAGGGCCUCAUAGAAGCCCCUUUCAGCUGCAUCAUAACGGGGCUUUUCCAGCCAUACCUCCC
.........(((.....(((((((((..................)))))))))...)))......... ( -16.87)
>391446_SINFRUG00000136056_FUGU_7740_7804/1-70
GUUGGCUCCCUCGUAAAAGCGUUUUUCUGCUUCAUCAAAGCGGUGUUUAUCGAACCAUACGUUCU
(((((.((...(((....))).....((((((.....))))))........)).))).))..... (  -9.90)
>consensus
A_UCAAACAGGGCCUCAUAGAAGCCCCUCUCAGCUGCAUCAUACCGGGGCUUCUCCAGCCAUACCUCC_C
..........(((.....(((((((((..................)))))))))...))).......... (-12.06 = -11.99 +  -0.06) 

391446-rev.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF