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Results for CNB 226677

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

226677_SINFRUG00000136631_FUGU_8002_8073/1-82      T----------TCTATATCTACCCTGTAGATCCGGATTTGTGTAAAAATCATTAAAGCAA
226677_ENSDARG00000010630_ZEBRAFISH_2115_2195/1-82 -TTTATGAAAATTTACAACTTTGTGATAGAACTTTATGAGTGCCTGGGTCCTGGGATTGG
226677_ENSMUSG00000038692_MOUSE_8407_8475/1-82     T----------TCTGTATATACCCTGTAGATCCGAATTTGTGTAAGGA--ATTTTGT-GG
226677_ENSRNOG00000007823_RAT_1817_1896/1-82       -TTTATGAAAATTTACAACTTTGTGATAGAAGTTTATGAGTGGTTGAATCCAGCGATTGG
                                                              * *  *  *      ****     **  ***                  


226677_SINFRUG00000136631_FUGU_8002_8073/1-82      TCACAAATTCGCTTCTAGGGGA
226677_ENSDARG00000010630_ZEBRAFISH_2115_2195/1-82 CCGAGGATGGTCATGTGGACGA
226677_ENSMUSG00000038692_MOUSE_8407_8475/1-82     TCACAAATTCGTATCTAGGGGA
226677_ENSRNOG00000007823_RAT_1817_1896/1-82       CCGGCGCCGGTCATGTGGCCG-
                                                    *           * * *  * 


//

226677.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 82
 Mean pairwise identity:  48.23
 Mean single sequence MFE: -20.30
 Consensus MFE:  -6.07
 Energy contribution:  -7.26
 Covariance contribution:   1.19
 Mean z-score:  -2.11
 Structure conservation index:   0.30
 SVM decision value:   0.82
 SVM RNA-class probability: 0.858439
 Prediction: RNA

######################################################################

>226677_SINFRUG00000136631_FUGU_8002_8073/1-82
UUCUAUAUCUACCCUGUAGAUCCGGAUUUGUGUAAAAAUCAUUAAAGCAAUCACAAAUUCGCUUCUAGGGGA
............(((.((((..((((((((((...................))))))))))..)))).))). ( -21.01)
>226677_ENSDARG00000010630_ZEBRAFISH_2115_2195/1-82
UUUAUGAAAAUUUACAACUUUGUGAUAGAACUUUAUGAGUGCCUGGGUCCUGGGAUUGGCCGAGGAUGGUCAUGUGGACGA
...........(((((....))))).....((.(((((.(((((.((((........)))).))).)).))))).)).... ( -17.90)
>226677_ENSMUSG00000038692_MOUSE_8407_8475/1-82
UUCUGUAUAUACCCUGUAGAUCCGAAUUUGUGUAAGGAAUUUUGUGGUCACAAAUUCGUAUCUAGGGGA
............(((.(((((.((((((((((................)))))))))).))))).))). ( -22.49)
>226677_ENSRNOG00000007823_RAT_1817_1896/1-82
UUUAUGAAAAUUUACAACUUUGUGAUAGAAGUUUAUGAGUGGUUGAAUCCAGCGAUUGGCCGGCGCCGGUCAUGUGGCCG
((((((((...(((((....)))))......))))))))(((......)))((.((((((((....)))))).)).)).. ( -19.80)
>consensus
___________UCUACAACUACCCGAUAGAACCGUAUGAGUGUAAGAAUCAUGAGAUUGGCCACAAAUGCGCAUCUAGGCGA
.....................((((.((((..((((((((((...................))))))))))..)))))))). ( -6.07 =  -7.26 +   1.19) 

226677.rnaz

RNAalifold consensus structure

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