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Results for CNB 393794

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

393794_ENSG00000138449_HUMAN_8847_8919/1-75        TCCATAAGGCTT-TGCCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAG-
393794_ENSDARG00000000241_ZEBRAFISH_9806_9879/1-75 TCTAGAAAGGTTATTTCTCTCCGACTTCAGCTACAGTGATAGCTAAGTTTGGAGAGGAGA
393794_ENSMUSG00000025993_MOUSE_9750_9822/1-75     CCCATAAGGCTT-TGGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAG-
393794_SINFRUG00000122977_FUGU_3355_3426/1-75      -CTATAAAAGCA-TTTCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAGGGGAG-
                                                    * * **      *  ** *** *************** **************  * ** 


393794_ENSG00000138449_HUMAN_8847_8919/1-75        GAAAAAAGAAAATCC
393794_ENSDARG00000000241_ZEBRAFISH_9806_9879/1-75 GAAGGGAGATATTC-
393794_ENSMUSG00000025993_MOUSE_9750_9822/1-75     ACAAAAAGAAGACCC
393794_SINFRUG00000122977_FUGU_3355_3426/1-75      GAAAACGGGAGCAAC
                                                     *    *       


//

393794.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 75
 Mean pairwise identity:  75.23
 Mean single sequence MFE: -19.83
 Consensus MFE: -17.79
 Energy contribution: -16.97
 Covariance contribution:  -0.81
 Mean z-score:  -2.44
 Structure conservation index:   0.90
 SVM decision value:   3.39
 SVM RNA-class probability: 0.999124
 Prediction: RNA

######################################################################

>393794_ENSG00000138449_HUMAN_8847_8919/1-75
UCCAUAAGGCUUUGCCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGGAAAAAAGAAAAUCC
(((....(((...)))((((((((((.(((((......)))))))).)))))))...)))............. ( -19.20)
>393794_ENSDARG00000000241_ZEBRAFISH_9806_9879/1-75
UCUAGAAAGGUUAUUUCUCUCCGACUUCAGCUACAGUGAUAGCUAAGUUUGGAGAGGAGAGAAGGGAGAUAUUC
(((.......((.((((((((((((((.(((((......)))))))).))))))))))).))....)))..... ( -21.80)
>393794_ENSMUSG00000025993_MOUSE_9750_9822/1-75
CCCAUAAGGCUUUGGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAAAAAGAAGACCC
.......((((((..(((((((((((.(((((......)))))))).))))))))..........)))).)). ( -19.20)
>393794_SINFRUG00000122977_FUGU_3355_3426/1-75
CUAUAAAAGCAUUUCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAGGGGAGGAAAACGGGAGCAAC
........((..(((((((((((((.(((((......)))))))).))))))))))(.....)....))... ( -19.10)
>consensus
UCCAUAAAGCUU_UGUCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAG_GAAAAAAGAAAAUCC
................(((((((((((.(((((......)))))))).))))))))................... (-17.79 = -16.97 +  -0.81) 

393794.rnaz

RNAalifold consensus structure

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