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Results for CNB 118430-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


118430_ENSG00000161813_HUMAN_8783_8838/1-57        -ATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTTCCTTTAGATGCTACCTG
118430_ENSMUSG00000046236_MOUSE_9818_9873/1-57     AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTGCCTTTAGATGTCACCT-
118430_SINFRUG00000145244_FUGU_2793_2848/1-57      CATCTCCTGCCACACCTTGGCATTGGGGTTCAAACCGGCACCCTTGGAGGTGACCT-
118430_ENSDARG00000028567_ZEBRAFISH_8408_8464/1-57 CACTTCCTGCCACACTTTAGCATTGGGATTCAGACCAGCCCCCTTGGTGGTCACCTT
118430_ENSRNOG00000013146_RAT_4861_4917/1-57       AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTGCCTTTAGATGTCACGTG
                                                    *  ** ***** ** ** ***** ** ** * *** *  ** ** *  *  ** * 

118430-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 57
 Mean pairwise identity:  78.91
 Mean single sequence MFE: -13.86
 Consensus MFE:  -7.86
 Energy contribution:  -7.26
 Covariance contribution:  -0.60
 Mean z-score:  -1.92
 Structure conservation index:   0.57
 SVM decision value:   0.41
 SVM RNA-class probability: 0.726953
 Prediction: RNA

######################################################################

>118430_ENSG00000161813_HUMAN_8783_8838/1-57
AUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUUCCUUUAGAUGCUACCUG
......(((((.....))))).(((.(((((((........))))))).))).... ( -12.00)
>118430_ENSMUSG00000046236_MOUSE_9818_9873/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACCU
.......((.(((.((..((((((.((.......))))))))...))))).))... ( -11.80)
>118430_SINFRUG00000145244_FUGU_2793_2848/1-57
CAUCUCCUGCCACACCUUGGCAUUGGGGUUCAAACCGGCACCCUUGGAGGUGACCU
((((((((((((.....)))))..(((((((.....)).))))).))))))).... ( -21.80)
>118430_ENSDARG00000028567_ZEBRAFISH_8408_8464/1-57
CACUUCCUGCCACACUUUAGCAUUGGGAUUCAGACCAGCCCCCUUGGUGGUCACCUU
...(((((((.........)))..))))....(((((.((.....)))))))..... ( -11.90)
>118430_ENSRNOG00000013146_RAT_4861_4917/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACGUG
.......((.(((.((..((((((.((.......))))))))...))))).)).... ( -11.80)
>consensus
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACCU_
...(((((((((.....)))))..))))............................. ( -7.86 =  -7.26 +  -0.60) 

118430-rev.rnaz

RNAalifold consensus structure

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