Index >

Results for CNB 430423-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


430423_ENSG00000114315_HUMAN_9189_9369/1-194        CTATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTTTCC
430423_ENSMUSG00000022528_MOUSE_9550_9730/1-194     CTATATATATCTGGGACTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTTTCC
430423_ENSDARG00000006514_ZEBRAFISH_9576_9766/1-194 -TATTTATATCTCCGGCTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTTTCC
430423_SINFRUG00000139781_FUGU_9492_9683/1-194      GTATTTATATCTCGCCCTGCACGCGAACGGCTCGTGTGAAACTTCCCAAACTTTCTTTCC
                                                     *** *******    ********************************************


430423_ENSG00000114315_HUMAN_9189_9369/1-194        CACAGTAACTTTCAGCCAATGGGAGGAGGAGACACGCGGC-----------ACCGCTCGT
430423_ENSMUSG00000022528_MOUSE_9550_9730/1-194     CACAGTAACTTTCAGCCAATGGGAGGAAGAGACACGCGGC-----------ACCGCTCGT
430423_ENSDARG00000006514_ZEBRAFISH_9576_9766/1-194 CACAGTAACTTTCTACCAATCAGCGCGCGGGACACGCGGCCCGAGGGGAGGATGGCTCGT
430423_SINFRUG00000139781_FUGU_9492_9683/1-194      CACAGTAACTTTCCACCAATCAGGGAGAGGGACACGCGGCCCGA-GGGAGGACGGCTCGT
                                                    *************  *****  * *   * **********           *  ******


430423_ENSG00000114315_HUMAN_9189_9369/1-194        GGACCGCGCCCCCCCATTGGCCGCCAGGCA-CAAGGTCTGGCGGCCAATGGCGCG-CGCC
430423_ENSMUSG00000022528_MOUSE_9550_9730/1-194     GGACTGCGCCCCCCCATTGGCCGCTAGGCA-CAAGGTCTGGCGGCCAATGGCGCG-CGCC
430423_ENSDARG00000006514_ZEBRAFISH_9576_9766/1-194 GGTCGGCGCCCCTCCATTGGTTGTTTAGCG-TTTGAGCGGGTGGCCAATGGCGCG-CGGC
430423_SINFRUG00000139781_FUGU_9492_9683/1-194      GGTCGGCGCCCTCCCATTGGTTGTTTGACAGCTCGAGCTGGCGGCCAATGGCGCGAGGCC
                                                    ** * ******  *******  *     *     *  * ** *************  * *


430423_ENSG00000114315_HUMAN_9189_9369/1-194        TGAGCCCAGGGCAC
430423_ENSMUSG00000022528_MOUSE_9550_9730/1-194     TGAGCCCGGGGCAC
430423_ENSDARG00000006514_ZEBRAFISH_9576_9766/1-194 CGGGTTTAGGGCAC
430423_SINFRUG00000139781_FUGU_9492_9683/1-194      CGGGTTCAGGGCA-
                                                     * *    ***** 

430423-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 194
 Mean pairwise identity:  80.79
 Mean single sequence MFE: -78.85
 Consensus MFE: -54.41
 Energy contribution: -56.22
 Covariance contribution:   1.81
 Mean z-score:  -2.01
 Structure conservation index:   0.69
 SVM decision value:   0.92
 SVM RNA-class probability: 0.880959
 Prediction: RNA

######################################################################

>430423_ENSG00000114315_HUMAN_9189_9369/1-194
CUAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAGCCAAUGGGAGGAGGAGACACGCGGCACCGCUCGUGGACCGCGCCCCCCCAUUGGCCGCCAGGCACAAGGUCUGGCGGCCAAUGGCGCGCGCCUGAGCCCAGGGCAC
.........((((((.((.(((((((.(((.(((((((...(((((...........(((((..((........))...))))))))))...)))))))..))).)))))...(((((....((((((((((((((((.....)))))))))))))))).)))))..)))))))))).... ( -83.00)
>430423_ENSMUSG00000022528_MOUSE_9550_9730/1-194
CUAUAUAUAUCUGGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAGCCAAUGGGAGGAAGAGACACGCGGCACCGCUCGUGGACUGCGCCCCCCCAUUGGCCGCUAGGCACAAGGUCUGGCGGCCAAUGGCGCGCGCCUGAGCCCGGGGCAC
.........((((((.((((.(((((.(((.(((((((...(((((...........(((((..((........))...))))))))))...)))))))..))).)))))....((((....((((((((((((((((.....)))))))))))))))).))))))...)))))))).... ( -79.80)
>430423_ENSDARG00000006514_ZEBRAFISH_9576_9766/1-194
UAUUUAUAUCUCCGGCUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCUACCAAUCAGCGCGCGGGACACGCGGCCCGAGGGGAGGAUGGCUCGUGGUCGGCGCCCCUCCAUUGGUUGUUUAGCGUUUGAGCGGGUGGCCAAUGGCGCGCGGCCGGGUUUAGGGCAC
......((..(((((((((.(((....(((.((((((.....((((.................(((......)))......(....)))))))))))))).((((((....((((.....))))...))))))(((((((..(((.((......)))))..)))))))))).)))))))))..))...... ( -73.10)
>430423_SINFRUG00000139781_FUGU_9492_9683/1-194
GUAUUUAUAUCUCGCCCUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCCACCAAUCAGGGAGAGGGACACGCGGCCCGAGGGAGGACGGCUCGUGGUCGGCGCCCUCCCAUUGGUUGUUUGACAGCUCGAGCUGGCGGCCAAUGGCGCGAGGCCCGGGUUCAGGGCA
.............(((((((((((((.....)))))))......(((....(..(((((((.....................)))))))..)...(.((((((((((....((((.....))))...)))))(((((((((((....((((....)))))))))))))))...).))))))))..)))))). ( -79.50)
>consensus
CUAUAUAUAUCUCGGACUGCACGCGAACGGCUCGUGUGAAACUUCCCAAACUUUCUUUCCCACAGUAACUUUCAACCAAUCAGAGGAAGAGACACGCGGC___________ACCGCUCGUGGACGGCGCCCCCCCAUUGGCCGCUAGGCA_CAAGAGCUGGCGGCCAAUGGCGCG_CGCCCGAGCCCAGGGCAC
...........(((((...(((((((.....))))))).....)))))...........((((.((..(((((...........)))))..))..((((.((.......)).))))..))))...(((((.....((((((((((((((......)))))))))))))))))))...((((.......)))).. (-54.41 = -56.22 +   1.81) 

430423-rev.rnaz

RNAalifold consensus structure

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