Index >

Results for CNB 500548

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

500548_ENSG00000180660_HUMAN_9905_10000/1-96       TTTCTCCACCGAAGTTGGCTCCAGCTCTAGCAGCCGCATTGGATCCCACAGCTTACTGCG
500548_ENSRNOG00000014738_RAT_9905_10000/1-96      TTTCTCCACCGAAGTTGGCTCCAGCGCTAGCAGCCGCATTGGATCCCACAGCCTATTGCG
500548_ENSDARG00000014906_ZEBRAFISH_9616_9710/1-96 -TTCTTCTCTAAAATTGGCTCCTGTACAAACAGCCGCGTTGGATCCCTCGGGTTACTGCG
500548_ENSMUSG00000048945_MOUSE_9905_10000/1-96    TTTCTCCACCGAAGTTGGCTCCAGCGCTAGCAGCCGCATTGGATCCCACAGCCTATTGCG
                                                    **** * *  ** ******** *  * * ******* ********* * *  ** ****


500548_ENSG00000180660_HUMAN_9905_10000/1-96       AGACTCCGGTGTACAATCCGGATCTCTGCCCCAACA
500548_ENSRNOG00000014738_RAT_9905_10000/1-96      AGACTCCGGTGTACAATCCGGATCTCTGCCCCAACA
500548_ENSDARG00000014906_ZEBRAFISH_9616_9710/1-96 AGACTCCGGTGTACAACCCGGATCTCTGTCCAAATA
500548_ENSMUSG00000048945_MOUSE_9905_10000/1-96    AGACTCCGGTGTACAATCCGGATCTCTGCCCCAACA
                                                   **************** *********** ** ** *


//

500548.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 96
 Mean pairwise identity:  88.37
 Mean single sequence MFE: -26.93
 Consensus MFE: -23.86
 Energy contribution: -23.17
 Covariance contribution:  -0.69
 Mean z-score:  -1.43
 Structure conservation index:   0.89
 SVM decision value:   0.21
 SVM RNA-class probability: 0.635059
 Prediction: RNA

######################################################################

>500548_ENSG00000180660_HUMAN_9905_10000/1-96
UUUCUCCACCGAAGUUGGCUCCAGCUCUAGCAGCCGCAUUGGAUCCCACAGCUUACUGCGAGACUCCGGUGUACAAUCCGGAUCUCUGCCCCAACA
.............(((((...........((((..((..(((...)))..))...))))((((.(((((........)))))))))....))))). ( -27.50)
>500548_ENSRNOG00000014738_RAT_9905_10000/1-96
UUUCUCCACCGAAGUUGGCUCCAGCGCUAGCAGCCGCAUUGGAUCCCACAGCCUAUUGCGAGACUCCGGUGUACAAUCCGGAUCUCUGCCCCAACA
.............(((((.(((((.((........)).)))))..............((((((.(((((........))))))))).)).))))). ( -27.50)
>500548_ENSDARG00000014906_ZEBRAFISH_9616_9710/1-96
UUCUUCUCUAAAAUUGGCUCCUGUACAAACAGCCGCGUUGGAUCCCUCGGGUUACUGCGAGACUCCGGUGUACAACCCGGAUCUCUGUCCAAAUA
................((..((((....))))..)).((((((((....)).......((((.(((((.(.....)))))))))).))))))... ( -25.20)
>500548_ENSMUSG00000048945_MOUSE_9905_10000/1-96
UUUCUCCACCGAAGUUGGCUCCAGCGCUAGCAGCCGCAUUGGAUCCCACAGCCUAUUGCGAGACUCCGGUGUACAAUCCGGAUCUCUGCCCCAACA
.............(((((.(((((.((........)).)))))..............((((((.(((((........))))))))).)).))))). ( -27.50)
>consensus
UUUCUCCACCGAAGUUGGCUCCAGCGCUAGCAGCCGCAUUGGAUCCCACAGCCUACUGCGAGACUCCGGUGUACAAUCCGGAUCUCUGCCCCAACA
........((((.((.((((...((....)))))))).))))...............((((((.(((((........))))))))).))....... (-23.86 = -23.17 +  -0.69) 

500548.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF