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Results for CNB 386451-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


386451_ENSG00000146067_HUMAN_5472_5540/1-71    GAGTGTGGG-GGGCAGTGGCAGCAGCAACAGGGCACTCTGAAGCCTGGGCAGGGAAAGGT
386451_ENSMUSG00000021495_MOUSE_6074_6142/1-71 AGGGGTGGG-TGGCAGTGGCAGCAGCCATAGGGCACTCTGAAGCCTGAGCGGGGAAAGGT
386451_SINFRUG00000121443_FUGU_419_489/1-71    GACGTTGGGCTATCCGGACCGGGAGAACCTAGTTTGGATGAAGGGTTGTGGAGGTTTGGT
386451_ENSRNOG00000012771_RAT_5781_5848/1-71   -GGGGTGGG-TGGCAGTGGCAGCAGCCATAGGGCACTCTGAAGCCTGGGCAGGGAAGGGT
                                                    ****    * *   * * **      *      *****  *      **   ***


386451_ENSG00000146067_HUMAN_5472_5540/1-71    GCTGCCGGGG-
386451_ENSMUSG00000021495_MOUSE_6074_6142/1-71 GCCACTGGGG-
386451_SINFRUG00000121443_FUGU_419_489/1-71    ACCAGCGGAGA
386451_ENSRNOG00000012771_RAT_5781_5848/1-71   GCTGCTGGGG-
                                                *    ** * 

386451-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 71
 Mean pairwise identity:  65.24
 Mean single sequence MFE: -25.20
 Consensus MFE: -13.60
 Energy contribution: -12.48
 Covariance contribution:  -1.13
 Mean z-score:  -1.96
 Structure conservation index:   0.54
 SVM decision value:   2.00
 SVM RNA-class probability: 0.985241
 Prediction: RNA

######################################################################

>386451_ENSG00000146067_HUMAN_5472_5540/1-71
GAGUGUGGGGGGCAGUGGCAGCAGCAACAGGGCACUCUGAAGCCUGGGCAGGGAAAGGUGCUGCCGGGG
((((((..(..((.((....)).))..)...)))))).....(((.(((((.(.....).))))).))) ( -25.40)
>386451_ENSMUSG00000021495_MOUSE_6074_6142/1-71
AGGGGUGGGUGGCAGUGGCAGCAGCCAUAGGGCACUCUGAAGCCUGAGCGGGGAAAGGUGCCACUGGGG
............((((((((.(.(((....))).(((((.........)))))...).))))))))... ( -25.10)
>386451_SINFRUG00000121443_FUGU_419_489/1-71
GACGUUGGGCUAUCCGGACCGGGAGAACCUAGUUUGGAUGAAGGGUUGUGGAGGUUUGGUACCAGCGGAGA
..((((((.....(((((((...(.(((((..(......)..))))).)...)))))))..)))))).... ( -24.00)
>386451_ENSRNOG00000012771_RAT_5781_5848/1-71
GGGGUGGGUGGCAGUGGCAGCAGCCAUAGGGCACUCUGAAGCCUGGGCAGGGAAGGGUGCUGCUGGGG
.....(((((.(.(((((....)))))..).))))).....(((.(((((.(.....).))))).))) ( -26.30)
>consensus
GAGGGUGGG_UGGCAGUGGCAGCAGCAACAGGGCACUCUGAAGCCUGGGCAGGGAAAGGUGCCACCGGGG_
...(((((.......(((((....))))).((((........))))...............)))))..... (-13.60 = -12.48 +  -1.13) 

386451-rev.rnaz

RNAalifold consensus structure

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