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Results for CNB 414348-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


414348_ENSG00000140416_HUMAN_5624_5696/1-73    GGCCTTTTTCTCTGCCAGCTCCAGCTTCTCCTGGGCATCTTTGAGAGCCTCAGAGTATTT
414348_ENSMUSG00000027940_MOUSE_4036_4106/1-73 -GCCTTCTTCTCTGCTAGCTCCAGCTTCTCCTGAGCATCCTTTAAAGCTTCCGAATACTT
414348_SINFRUG00000130484_FUGU_7389_7461/1-73  GGCTTTCTTTTCTGCCAGTTCAAGCTTCTCCTGAGCATCTTTAAGAGCCTCGGAGAACTT
414348_ENSRNOG00000018184_RAT_5891_5963/1-73   GGCCTTTTTCTCCGCCAGCTCCAGTTTCTCCTGGGCATCTTTGAGAGCCTCGGAGTATTT
                                                ** ** ** ** ** ** ** ** ******** ***** ** * *** ** **  * **


414348_ENSG00000140416_HUMAN_5624_5696/1-73    GTCCAGTTCATCT
414348_ENSMUSG00000027940_MOUSE_4036_4106/1-73 GTCCAGCTCATC-
414348_SINFRUG00000130484_FUGU_7389_7461/1-73  GTCCAACTCATCT
414348_ENSRNOG00000018184_RAT_5891_5963/1-73   GTCCAGTTCATCT
                                               *****  ***** 

414348-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 73
 Mean pairwise identity:  83.79
 Mean single sequence MFE: -17.12
 Consensus MFE:  -9.82
 Energy contribution: -11.20
 Covariance contribution:   1.38
 Mean z-score:  -2.21
 Structure conservation index:   0.57
 SVM decision value:   0.13
 SVM RNA-class probability: 0.596319
 Prediction: RNA

######################################################################

>414348_ENSG00000140416_HUMAN_5624_5696/1-73
GGCCUUUUUCUCUGCCAGCUCCAGCUUCUCCUGGGCAUCUUUGAGAGCCUCAGAGUAUUUGUCCAGUUCAUCU
(((..........)))(((....)))....(((((((.(((((((...)))))))....)))))))....... ( -21.00)
>414348_ENSMUSG00000027940_MOUSE_4036_4106/1-73
GCCUUCUUCUCUGCUAGCUCCAGCUUCUCCUGAGCAUCCUUUAAAGCUUCCGAAUACUUGUCCAGCUCAUC
................((((.((......)))))).........((((..(((....)))...)))).... (  -7.60)
>414348_SINFRUG00000130484_FUGU_7389_7461/1-73
GGCUUUCUUUUCUGCCAGUUCAAGCUUCUCCUGAGCAUCUUUAAGAGCCUCGGAGAACUUGUCCAACUCAUCU
(((..........))).(..((((.((((((.(((..((.....))..)))))))))))))..)......... ( -21.10)
>414348_ENSRNOG00000018184_RAT_5891_5963/1-73
GGCCUUUUUCUCCGCCAGCUCCAGUUUCUCCUGGGCAUCUUUGAGAGCCUCGGAGUAUUUGUCCAGUUCAUCU
(((..........)))..............(((((((.(((((((...)))))))....)))))))....... ( -18.80)
>consensus
GGCCUUCUUCUCUGCCAGCUCCAGCUUCUCCUGAGCAUCUUUGAGAGCCUCGGAGUACUUGUCCAGCUCAUCU
(((..........)))(((....)))....(((((((.(((((((...)))))))....)))))))....... ( -9.82 = -11.20 +   1.38) 

414348-rev.rnaz

RNAalifold consensus structure

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