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Results for CNB 386638

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

386638_ENSG00000158066_HUMAN_936_989/1-54        AGGCCAAGGTGCAACTTCCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386638_ENSRNOG00000016220_RAT_9890_9943/1-54     AGGCAACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386638_ENSMUSG00000051666_MOUSE_9545_9598/1-54   AGGCAACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGACACCA
386638_ENSDARG00000006691_ZEBRAFISH_905_956/1-54 -GGTGAAGGTGCAACAGTTTTCGGTCGTCCCGAATCCGGGTTCATCCGACACC-
386638_SINFRUG00000134705_FUGU_6362_6413/1-54    -GGTGAAGGTGCAACAGTAATCGGTCGTCCCGACTGCGGGTTCATCCGACACC-
                                                  **  * ********     ************* * ***************** 


//

386638.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 54
 Mean pairwise identity:  87.55
 Mean single sequence MFE: -17.26
 Consensus MFE: -15.32
 Energy contribution: -15.32
 Covariance contribution:   0.00
 Mean z-score:  -1.49
 Structure conservation index:   0.89
 SVM decision value:   0.46
 SVM RNA-class probability: 0.744332
 Prediction: RNA

######################################################################

>386638_ENSG00000158066_HUMAN_936_989/1-54
AGGCCAAGGUGCAACUUCCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.......((((.........((((..(.((((....))))..)..)))))))). ( -16.00)
>386638_ENSRNOG00000016220_RAT_9890_9943/1-54
AGGCAACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.(....)((((.........((((..(.((((....))))..)..)))))))). ( -17.30)
>386638_ENSMUSG00000051666_MOUSE_9545_9598/1-54
AGGCAACGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.(....)((((.........((((..(.((((....))))..)..)))))))). ( -17.30)
>386638_ENSDARG00000006691_ZEBRAFISH_905_956/1-54
GGUGAAGGUGCAACAGUUUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACC
((((..((((.(((.(..(((((.....)))))..)..))))).))..)))) ( -17.50)
>386638_SINFRUG00000134705_FUGU_6362_6413/1-54
GGUGAAGGUGCAACAGUAAUCGGUCGUCCCGACUGCGGGUUCAUCCGACACC
((((..((((.(((.(((.((((.....)))).)))..))))).))..)))) ( -18.20)
>consensus
AGGCAAAGGUGCAACUUUCUUCGGUCGUCCCGAAUCCGGGUUCAUCCGACACCA
.......((((.........((((..(.((((....))))..)..)))))))). (-15.32 = -15.32 +   0.00) 

386638.rnaz

RNAalifold consensus structure

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