Index >

Results for CNB 481656_2-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       AATATCTTCATCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCG
481656_ENSG00000119866_HUMAN_9496_9947/1-454        AATATCTTCATCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCG
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     AATATCTTCATCAGTGCCTTTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCG
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 AATATCTTCATCAATGCC-TTTGACATCCAAAATAAATTAGAAATAATACAAAGATGGCG
                                                    ************* **** *****************************************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       CAGGGAAGATGAATTGTGGGAGAGCCGTCATGGC----------NNNNNNNNNNNNNNAA
481656_ENSG00000119866_HUMAN_9496_9947/1-454        CAGGGAAGATGAATTGTGGGAGAGCCGTCATGGCTTTTTTTTAAGCNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     CAGGGAAGATGAATTGTGGGAGAGCCGTCATGGC---------------NNNNNNNNNNN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 CAGGGAAGATGGATTGTGGGATAGCCGTCATGGC---------------TTTTTTGAAAA
                                                    *********** ********* ************                          


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       GAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSG00000119866_HUMAN_9496_9947/1-454        NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     NAAGGAAAAA------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 GAGAGAGAGA------------------------------------------------GA
                                                                                                                


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       NNTGAAAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCC
481656_ENSG00000119866_HUMAN_9496_9947/1-454        NNTGAAAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCC
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     NNTGAAAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCC
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 GATG-AAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCC
                                                      ** *******************************************************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       TGCGAACTTGAACGTCAGGAGTCTGGATGGACAGAGACACACAAAACATGGGCAGGGC-G
481656_ENSG00000119866_HUMAN_9496_9947/1-454        TGCGAACTTGAACGTCAGGAGTCTGGATGGACAGAGACACACAAAACATGGGCAGGGC-G
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     TGCGAACTTGAACGTCAGGAGTCTGGATGGACAGAGACACACAAAACATGGGCAGGGC-G
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 TGCGAACTTGAACGTCAGGAG-ATGGATGGACACAGACATACAGAACATGGGCAGGGCAA
                                                    *********************  ********** ***** *** **************  

481656_2-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 300
 Mean pairwise identity:  81.21
 Mean single sequence MFE: -62.80
 Consensus MFE: -54.06
 Energy contribution: -56.80
 Covariance contribution:   2.75
 Mean z-score:  -1.82
 Structure conservation index:   0.86
 SVM decision value:   1.00
 SVM RNA-class probability: 0.897705
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
AAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCNNNNNNNNNNNNNNAAGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGCG
..(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))............((((((((.........................................................................................)))))....((((.(((((....(((((((..(((.(((((...))))).))))))))))....)))))..((((......))))..............))))..))). ( -61.14)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
AAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCUUUUUUUUAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGCG
..(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))..(((..((((((((.....))))))))..))).........................................................................................((....((((.(((((....(((((((..(((.(((((...))))).))))))))))....)))))..((((......))))..............))))...)). ( -65.10)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
AAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGCNNNNNNNNNNNNAAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGCG
..(((((((.((.((((((((((.....)))))...((((....))))........))))).)))))))))............((((((((..............................................................................)))))....((((.(((((....(((((((..(((.(((((...))))).))))))))))....)))))..((((......))))..............))))..))). ( -61.28)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
AAUAUCUUCAUCAAUGCCUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGGAUUGUGGGAUAGCCGUCAUGGCUUUUUUGAAAAGAGAGAGAGAGAGAUGAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGAUGGAUGGACACAGACAUACAGAACAUGGGCAGGGCAA
..(((((((.((..((((((((.....))))....((((....))))........))))..)))))))))............((((((((..(((((((.........)))))))..)))).....))))....(((((((((..(((...(((((((((((((((...)))))..))..))))))))........(((..((....))..))).)))..)).)))..)))).. ( -63.70)
>consensus
AAUAUCUUCAUCAGUGCCUUUUGACAUCCAAAAUAAAUUAGAAAUAAUACAAAGAUGGCGCAGGGAAGAUGAAUUGUGGGAGAGCCGUCAUGGC___________________________AAAGAAAAA____________________________________________________UGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGC_G
..(((((((.((.(((((.((((.....))))....((((....))))........))))).)))))))))............((((((((...................................................................................................)))))....((((.(((((....(((((((..(((.(((((...))))).))))))))))....)))))..((((......))))..............))))..))).. (-54.06 = -56.80 +   2.75) 

481656_2-rev.rnaz

RNAalifold consensus structure

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