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Results for CNB 461745-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


461745_ENSMUSG00000034255_MOUSE_6286_6370/1-86     CACCTCTAACACATTCTTCTTGCTGGATTTGTCTTTGGGGGCCCAAGAGAGAGAGGCCCC
461745_SINFRUG00000131017_FUGU_9289_9373/1-86      -ACCTCCAAAACATTCTTTTTGCTGGATTTGTCTTTTGTGGCCCAGCAAATAGTCGCTCC
461745_ENSRNOG00000028569_RAT_5899_5982/1-86       -ACCTCTAGCACATTCTTCTTGCTGGATTTGTCTTTGGGGGCCCACGAGAGCGAGGCCCC
461745_ENSDARG00000006344_ZEBRAFISH_5690_5774/1-86 -ACCTCCAGAACGTTTTTCTTGCTTGATTTGTCCTTGGGCGCCCGGTTAATTGTGGCGCC
                                                    ***** *  ** ** ** ***** ******** ** *  ****     *  *  ** **


461745_ENSMUSG00000034255_MOUSE_6286_6370/1-86     CTTCAGTTCGACTGTGTATTCAGGG-
461745_SINFRUG00000131017_FUGU_9289_9373/1-86      TTTCAGGTCCACTGTGACCTCTGGGA
461745_ENSRNOG00000028569_RAT_5899_5982/1-86       CCTCAGTTCGACTGTATATTCAGGG-
461745_ENSDARG00000006344_ZEBRAFISH_5690_5774/1-86 TTTCAGATCCACTGTGAATTCTGGGA
                                                     **** ** *****    ** *** 

461745-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 86
 Mean pairwise identity:  77.15
 Mean single sequence MFE: -26.90
 Consensus MFE: -14.71
 Energy contribution: -15.78
 Covariance contribution:   1.06
 Mean z-score:  -2.06
 Structure conservation index:   0.55
 SVM decision value:   0.42
 SVM RNA-class probability: 0.730303
 Prediction: RNA

######################################################################

>461745_ENSMUSG00000034255_MOUSE_6286_6370/1-86
CACCUCUAACACAUUCUUCUUGCUGGAUUUGUCUUUGGGGGCCCAAGAGAGAGAGGCCCCCUUCAGUUCGACUGUGUAUUCAGGG
..(((...(((((.((.....((((((.........((((((((........).)))))))))))))..)).)))))....))). ( -28.20)
>461745_SINFRUG00000131017_FUGU_9289_9373/1-86
ACCUCCAAAACAUUCUUUUUGCUGGAUUUGUCUUUUGUGGCCCAGCAAAUAGUCGCUCCUUUCAGGUCCACUGUGACCUCUGGGA
..............((.((((((((....(((......))))))))))).))....((((...(((((......)))))..)))) ( -22.90)
>461745_ENSRNOG00000028569_RAT_5899_5982/1-86
ACCUCUAGCACAUUCUUCUUGCUGGAUUUGUCUUUGGGGGCCCACGAGAGCGAGGCCCCCCUCAGUUCGACUGUAUAUUCAGGG
.(((((((((.........))))))).........((((((((.(....).).)))))))..(((.....)))........)). ( -29.00)
>461745_ENSDARG00000006344_ZEBRAFISH_5690_5774/1-86
ACCUCCAGAACGUUUUUCUUGCUUGAUUUGUCCUUGGGCGCCCGGUUAAUUGUGGCGCCUUUCAGAUCCACUGUGAAUUCUGGGA
...(((((((.....(((......((((((.....((((((((((....))).)))))))..))))))......)))))))))). ( -27.50)
>consensus
_ACCUCCAAAACAUUCUUCUUGCUGGAUUUGUCUUUGGGGGCCCAGGAAAGAGAGGCCCCCUUCAGUUCCACUGUGAAUUCAGGG_
..((.....................((((((.....((((((((........).)))))))..))))))..(((......))))). (-14.71 = -15.78 +   1.06) 

461745-rev.rnaz

RNAalifold consensus structure

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