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Results for CNB 136553

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

136553_ENSG00000126773_HUMAN_3649_3745/1-97        ACACTACTCTCTTCTCCCTTACTCCCTCTTTTCACCCTTCCTGTGTTCTTGGTGGGGTTT
136553_ENSDARG00000008933_ZEBRAFISH_6049_6143/1-97 -CTCTTCTCTCTGCCCCTCTCCTTCCACTATTCACACTACCGGTGTTCCTGGTGGGATTT
136553_ENSMUSG00000034501_MOUSE_3154_3250/1-97     ACACTACTGTCATCTCCTCTACTGCCCCTCTTCACACTTCCTGTTTTCTTGGTGGGGTTT
136553_ENSRNOG00000005568_RAT_1822_1918/1-97       ACAGTGCTGTCCTCTCCTCTACTGCCTCTCTTCACACTGCCTGTTTTCTTGGTGGGGTTC
                                                    *  * ** **  * **  * ** ** ** ***** ** ** ** *** ******* ** 


136553_ENSG00000126773_HUMAN_3649_3745/1-97        CCCCGACCTATTCAGAGTTGGCCAGGAGCAGCAGGCA
136553_ENSDARG00000008933_ZEBRAFISH_6049_6143/1-97 CCCAGGCCGCTGCGCTCATGGCCAGGCACTCCTGGC-
136553_ENSMUSG00000034501_MOUSE_3154_3250/1-97     CCTCGTCCAGTTCAGAGCTGGCCAGGAGCAGTGGGCA
136553_ENSRNOG00000005568_RAT_1822_1918/1-97       CCTCGTCCAGTTCAGAGCTGGCCAGGAGCAGTGGGCA
                                                   **  * **  * *     ********  *    *** 


//

136553.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 97
 Mean pairwise identity:  75.43
 Mean single sequence MFE: -27.75
 Consensus MFE: -18.73
 Energy contribution: -18.72
 Covariance contribution:  -0.00
 Mean z-score:  -1.60
 Structure conservation index:   0.67
 SVM decision value:   0.36
 SVM RNA-class probability: 0.704306
 Prediction: RNA

######################################################################

>136553_ENSG00000126773_HUMAN_3649_3745/1-97
ACACUACUCUCUUCUCCCUUACUCCCUCUUUUCACCCUUCCUGUGUUCUUGGUGGGGUUUCCCCGACCUAUUCAGAGUUGGCCAGGAGCAGCAGGCA
.......................................((((((((((((((((((...))))(((((....)).))).)))))))))).)))).. ( -26.80)
>136553_ENSDARG00000008933_ZEBRAFISH_6049_6143/1-97
CUCUUCUCUCUGCCCCUCUCCUUCCACUAUUCACACUACCGGUGUUCCUGGUGGGAUUUCCCAGGCCGCUGCGCUCAUGGCCAGGCACUCCUGGC
..........((((.......((((((((...((((.....))))...)))))))).......(((((.((....))))))).))))........ ( -26.20)
>136553_ENSMUSG00000034501_MOUSE_3154_3250/1-97
ACACUACUGUCAUCUCCUCUACUGCCCCUCUUCACACUUCCUGUUUUCUUGGUGGGGUUUCCUCGUCCAGUUCAGAGCUGGCCAGGAGCAGUGGGCA
...(((((((.............(((((.((....((.....))......)).))))).((((.(.(((((.....)))))).)))))))))))... ( -29.90)
>136553_ENSRNOG00000005568_RAT_1822_1918/1-97
ACAGUGCUGUCCUCUCCUCUACUGCCUCUCUUCACACUGCCUGUUUUCUUGGUGGGGUUCCCUCGUCCAGUUCAGAGCUGGCCAGGAGCAGUGGGCA
........((((.((.((((...(((.((((..((((.....)).....((((((((...))))).)))))..))))..)))..)))).)).)))). ( -28.10)
>consensus
ACACUACUCUCUUCUCCUCUACUGCCUCUCUUCACACUUCCUGUGUUCUUGGUGGGGUUUCCCCGUCCAGUUCAGAGCUGGCCAGGAGCAGCGGGCA
.......................................(((((((((((((.(((....)))...(((((.....)))))))))))))).)))).. (-18.73 = -18.72 +  -0.00) 

136553.rnaz

RNAalifold consensus structure

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