Index >

Results for CNB 481656_0-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       ----NNNNNNNNNNNNNNAAGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSG00000119866_HUMAN_9496_9947/1-454        TTAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     ---------NNNNNNNNNNNNAAGGAAAAA------AANNNNNNNNNNNNNNNNNNNNNN
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 ---------TTTTTTGAAAAGAGAGAGAGA------------------------------
                                                                                                                


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       NNNNNNNNNNNNNNNNNNNNNNTGAAAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTC
481656_ENSG00000119866_HUMAN_9496_9947/1-454        NNNNNNNNNNNNNNNNNNNNNNTGAAAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTC
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     NNNNNNNNNNNNNNNNNNNNNNTGAAAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTC
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 ------------------GAGATG-AAAAAATGGCAAAAGCCCCCCTGAGCTGCAAGTTC
                                                                          ** ***********************************


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       AAGTGCGGACGTGACGTCCCTGCGAACTTGAACGTCAGGAGTCTGGATGGACAGAGACAC
481656_ENSG00000119866_HUMAN_9496_9947/1-454        AAGTGCGGACGTGACGTCCCTGCGAACTTGAACGTCAGGAGTCTGGATGGACAGAGACAC
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     AAGTGCGGACGTGACGTCCCTGCGAACTTGAACGTCAGGAGTCTGGATGGACAGAGACAC
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 AAGTGCGGACGTGACGTCCCTGCGAACTTGAACGTCAGGAG-ATGGATGGACACAGACAT
                                                    *****************************************  ********** ***** 


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       ACAAAACATGGGCAGGGC-GAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCTC-ACAC
481656_ENSG00000119866_HUMAN_9496_9947/1-454        ACAAAACATGGGCAGGGC-GAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCTC-ACAC
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     ACAAAACATGGGCAGGGC-GAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCTC-ACAC
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 ACAGAACATGGGCAGGGCAAAGCCGTGGAGTA--GGAGGAGGGAGTGGAAATAACAAAAC
                                                    *** **************  *** *  *** *  **********  ** **   * * **


481656_ENSRNOG00000007049_RAT_9511_9952/1-454       CAATGGACACACATCAGGGGCTGGACATGAAAAAGAGACCAGGACAAGCCAATGGCCAGT
481656_ENSG00000119866_HUMAN_9496_9947/1-454        CAATGGACACACATCAGGGGCTGGACATGAAAAAGAGACCAGGACAAGCCAATGGCCAGT
481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454     CAATGGACACACATCAGGGGCTGGACATGAAAAAGAGACCAGGACAAGCCAATGGCCAG-
481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454 CAATGGACACTCATTAGGGGCTGGACATGAAAAATAGACCCGAAGAAGCCAATGGACAG-
                                                    ********** *** ******************* ***** * * ********** *** 

481656_0-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 300
 Mean pairwise identity:  79.27
 Mean single sequence MFE: -62.25
 Consensus MFE: -50.20
 Energy contribution: -51.51
 Covariance contribution:   1.31
 Mean z-score:  -2.14
 Structure conservation index:   0.81
 SVM decision value:   1.74
 SVM RNA-class probability: 0.974945
 Prediction: RNA

######################################################################

>481656_ENSRNOG00000007049_RAT_9511_9952/1-454
NNNNNNNNNNNNNNAAGAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGCGAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCUCACACCAAUGGACACACAUCAGGGGCUGGACAUGAAAAAGAGACCAGGACAAGCCAAUGGCCAGU
.......................................................................................((((.....(((((((...((((..((((......))))....((.((((((...((((.....))))..((((......))))................)))))))).))))......))))).)).((...(((....)))...)).............((..(((((..(.((..........)))..).))))..)))))).. ( -62.50)
>481656_ENSG00000119866_HUMAN_9496_9947/1-454
UUAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGCGAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCUCACACCAAUGGACACACAUCAGGGGCUGGACAUGAAAAAGAGACCAGGACAAGCCAAUGGCCAGU
...........................................................................................((((.....(((((((...((((..((((......))))....((.((((((...((((.....))))..((((......))))................)))))))).))))......))))).)).((...(((....)))...)).............((..(((((..(.((..........)))..).))))..)))))).. ( -62.50)
>481656_ENSMUSG00000000861_MOUSE_2861_3289/1-454
NNNNNNNNNNNNAAGGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGCGAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCUCACACCAAUGGACACACAUCAGGGGCUGGACAUGAAAAAGAGACCAGGACAAGCCAAUGGCCAG
............................................................................((((.....(((((((...((((..((((......))))....((.((((((...((((.....))))..((((......))))................)))))))).))))......))))).)).((...(((....)))...)).............((..(((((..(.((..........)))..).))))..)))))). ( -62.50)
>481656_ENSDARG00000018362_ZEBRAFISH_9467_9847/1-454
UUUUUUGAAAAGAGAGAGAGAGAGAUGAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGAUGGAUGGACACAGACAUACAGAACAUGGGCAGGGCAAAGCCGUGGAGUAGGAGGAGGGAGUGGAAAUAACAAAACCAAUGGACACUCAUUAGGGGCUGGACAUGAAAAAUAGACCCGAAGAAGCCAAUGGACAG
((((((....)))))).................((((...((((((((((..(..(..(((((((((((((((...)))))..))..))))))))(((.....(((..((....))..))).((.....)))))..(((...))))..)..))))......(((((....................)))))....))))))((...............))......))))........ ( -61.51)
>consensus
_____________________AAAGAAAAA____________________________________________________UGAAAAAAAUGGCAAAAGCCCCCCUGAGCUGCAAGUUCAAGUGCGGACGUGACGUCCCUGCGAACUUGAACGUCAGGAGUCUGGAUGGACAGAGACACACAAAACAUGGGCAGGGC_GAGCAGGAGAGAAGGGGAGGAGGGAAGGGGAAGCUC_ACACCAAUGGACACACAUCAGGGGCUGGACAUGAAAAAGAGACCAGGACAAGCCAAUGGCCAG_
...........................................................................................((((.......(((((((.((((..(((((((((((((((...)))))..))..))))))))(((.....((((......))))))).............)))).........................((...(((....)))....))............)))))))((((..............)))).....))))......... (-50.20 = -51.51 +   1.31) 

481656_0-rev.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF