Index >

Results for CNB 393756-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


393756_ENSG00000138449_HUMAN_8846_8910/1-66        -TTTTTCCTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGGCAAAGCCTT
393756_ENSMUSG00000025993_MOUSE_9749_9813/1-66     -TTTTGTCTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGCCAAAGCCTT
393756_ENSDARG00000000241_ZEBRAFISH_9806_9871/1-66 CCCTTCTCTCCTCTCCAAACTTAGCTATCACTGTAGCTGAAGTCGGAGAGAAATAACCTT
393756_SINFRUG00000122977_FUGU_3355_3417/1-66      -GTTTTCCTCCCCTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGAAAT-GCTTT
393756_ENSRNOG00000003872_RAT_9698_9762/1-66       -TTATGTCTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGCTAAAGCCTT
                                                       *  ** *  ************** *************** *** **  *   * **


393756_ENSG00000138449_HUMAN_8846_8910/1-66        ATGGAA
393756_ENSMUSG00000025993_MOUSE_9749_9813/1-66     ATGGGA
393756_ENSDARG00000000241_ZEBRAFISH_9806_9871/1-66 TCTAGA
393756_SINFRUG00000122977_FUGU_3355_3417/1-66      TATAG-
393756_ENSRNOG00000003872_RAT_9698_9762/1-66       ATGGAA
                                                         

393756-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 66
 Mean pairwise identity:  80.12
 Mean single sequence MFE: -18.36
 Consensus MFE: -17.20
 Energy contribution: -17.56
 Covariance contribution:   0.36
 Mean z-score:  -3.39
 Structure conservation index:   0.94
 SVM decision value:   3.24
 SVM RNA-class probability: 0.998829
 Prediction: RNA

######################################################################

>393756_ENSG00000138449_HUMAN_8846_8910/1-66
UUUUUCCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGGCAAAGCCUUAUGGAA
...((((.....(((((..(((((((......)))))))..)))))(((((...)))))..)))) ( -21.30)
>393756_ENSMUSG00000025993_MOUSE_9749_9813/1-66
UUUUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCCAAAGCCUUAUGGGA
(((((....((((((((..(((((((......)))))))..)))))))).)))))((....)).. ( -19.70)
>393756_ENSDARG00000000241_ZEBRAFISH_9806_9871/1-66
CCCUUCUCUCCUCUCCAAACUUAGCUAUCACUGUAGCUGAAGUCGGAGAGAAAUAACCUUUCUAGA
..........((((((.(..((((((((....))))))))..).))))))................ ( -18.20)
>393756_SINFRUG00000122977_FUGU_3355_3417/1-66
GUUUUCCUCCCCUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAAUGCUUUUAUAG
............(((((..(((((((......)))))))..)))))................. ( -13.80)
>393756_ENSRNOG00000003872_RAT_9698_9762/1-66
UUAUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCUAAAGCCUUAUGGAA
.........((((((((..(((((((......)))))))..))))))))......((....)).. ( -18.80)
>consensus
_UUUUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAAAAGCCUUAUGGGA
..........((((((((..(((((((......)))))))..))))))))................ (-17.20 = -17.56 +   0.36) 

393756-rev.rnaz

RNAalifold consensus structure

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