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Results for CNB 481033

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

481033_ENSG00000080345_HUMAN_5050_5102/1-94        ----------------------------------------AATTAGCTTGGTGAAGTCAG
481033_ENSDARG00000011907_ZEBRAFISH_9198_9274/1-94 C-AGCTTCTGTTGGAAGCCACTGTAAAGGGAATACCTCAGAAGGTGCTTGGTTCTG-CAG
481033_ENSMUSG00000055931_MOUSE_6115_6167/1-94     ----------------------------------------AATTAGCTTGGTGAAGTCAG
481033_ENSRNOG00000005893_RAT_7163_7239/1-94       -TAGGTTCTCATGGAAATTACAGTTAAAGGACTTCCTCAGAAAGTATTAGGTTCAC-CAG
                                                                                           **  :. *:*** .:  ***


481033_ENSG00000080345_HUMAN_5050_5102/1-94        TTACTGAATCAGGTAAGCACTATTACACTGATC-
481033_ENSDARG00000011907_ZEBRAFISH_9198_9274/1-94 CTTATCAAGT-GGCAAACA--------------T
481033_ENSMUSG00000055931_MOUSE_6115_6167/1-94     TTACTGAAGCAGGTAAGCACTGTCACAGTGGTC-
481033_ENSRNOG00000005893_RAT_7163_7239/1-94       CATATCAGGT-TGCTAATA--------------T
                                                    ::.* *.    * :*. *               


//

481033.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 94
 Mean pairwise identity:  35.79
 Mean single sequence MFE: -13.55
 Consensus MFE:  -2.42
 Energy contribution:  -2.68
 Covariance contribution:   0.25
 Mean z-score:  -0.52
 Structure conservation index:   0.18
 SVM decision value:  -0.04
 SVM RNA-class probability: 0.512680
 Prediction: RNA

######################################################################

>481033_ENSG00000080345_HUMAN_5050_5102/1-94
AAUUAGCUUGGUGAAGUCAGUUACUGAAUCAGGUAAGCACUAUUACACUGAUC
.......(..((((......))))..)(((((((((......)))).))))). ( -10.50)
>481033_ENSDARG00000011907_ZEBRAFISH_9198_9274/1-94
CAGCUUCUGUUGGAAGCCACUGUAAAGGGAAUACCUCAGAAGGUGCUUGGUUCUGCAGCUUAUCAAGUGGCAAACAU
((((....))))...((((((....(((.....)))...(((.(((........))).)))....))))))...... ( -22.40)
>481033_ENSMUSG00000055931_MOUSE_6115_6167/1-94
AAUUAGCUUGGUGAAGUCAGUUACUGAAGCAGGUAAGCACUGUCACAGUGGUC
.....(((((((((......))))).)))).......(((((...)))))... ( -11.30)
>481033_ENSRNOG00000005893_RAT_7163_7239/1-94
UAGGUUCUCAUGGAAAUUACAGUUAAAGGACUUCCUCAGAAAGUAUUAGGUUCACCAGCAUAUCAGGUUGCUAAUAU
....((((...(((......((((....)))))))..)))).((((((((....)).(((........))))))))) ( -10.00)
>consensus
________________________________________AAUGAGCUUGGUGAAG_CAGCUAAUCAAGC_GGCAAACA_______________
.............................................(((((.(....(((.....)))....).)))))................ ( -2.42 =  -2.68 +   0.25) 

481033.rnaz

RNAalifold consensus structure

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