Index >

Results for CNB 363129

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

363129_ENSG00000104313_HUMAN_8175_8288/1-119        C-CCCCCTGACAAGGGGAGG--AGGAGGATAGACCTGCA-GGAGGAAACAACAGTTGAGA
363129_ENSDARG00000014259_ZEBRAFISH_7973_8070/1-119 ---------------GGAGG--AGG--GA-AGACCTGGAAGGAGGAAACAACGGTGGAGG
363129_ENSMUSG00000025932_MOUSE_8198_8313/1-119     C-CCTCCTGACAAGGGGAGGGGAGGAGGATAGACCTGCA-GGAAGAAACAACAGTTGAGC
363129_ENSRNOG00000007590_RAT_8238_8352/1-119       -TCCTCTTGACAAGGGGAGGGGAGGAGGAGAGACCTGCA-GGAAGAAACAGCAGTTGAGC
                                                                   *****  ***  ** ******* * *** ****** * ** *** 


363129_ENSG00000104313_HUMAN_8175_8288/1-119        CCTC-AACTTAAAGACAATATGCCTTTCACTGCTGCAGTATCCTCCTTTTTCTCTTTTG
363129_ENSDARG00000014259_ZEBRAFISH_7973_8070/1-119 GGTTGAACCTACAGACAATGTGCCTCTCTGTTCCACCGACTCCTC-TCTTCCCCTTCTG
363129_ENSMUSG00000025932_MOUSE_8198_8313/1-119     CCTC-CACTTAAAGACACTATGCCTTTCCTGGCTGCAGTATCCTCCCTTTTCTCGTTTG
363129_ENSRNOG00000007590_RAT_8238_8352/1-119       CCTC-CACTTAAAGATACTATGCCTTTCCTGGCCGCAGTATCCTCCCTTTTCTCTTTT-
                                                      *   ** ** *** * * ***** **    *  * *  *****   ** * * * * 


//

363129.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 119
 Mean pairwise identity:  73.50
 Mean single sequence MFE: -40.10
 Consensus MFE: -16.38
 Energy contribution: -17.88
 Covariance contribution:   1.50
 Mean z-score:  -2.58
 Structure conservation index:   0.41
 SVM decision value:   0.56
 SVM RNA-class probability: 0.783159
 Prediction: RNA

######################################################################

>363129_ENSG00000104313_HUMAN_8175_8288/1-119
CCCCCCUGACAAGGGGAGGAGGAGGAUAGACCUGCAGGAGGAAACAACAGUUGAGACCUCAACUUAAAGACAAUAUGCCUUUCACUGCUGCAGUAUCCUCCUUUUUCUCUUUUG
(((((((....))))).))(((((((((...((((((.((........((((((....)))))).((((.(.....).))))..)).)))))))))))))))............ ( -42.80)
>363129_ENSDARG00000014259_ZEBRAFISH_7973_8070/1-119
GGAGGAGGGAAGACCUGGAAGGAGGAAACAACGGUGGAGGGGUUGAACCUACAGACAAUGUGCCUCUCUGUUCCACCGACUCCUCUCUUCCCCUUCUG
((((((((.....)))((((((((((.....((((((((.((..((...((((.....))))..)).)).))))))))..))))).)))))))))).. ( -40.90)
>363129_ENSMUSG00000025932_MOUSE_8198_8313/1-119
CCCUCCUGACAAGGGGAGGGGAGGAGGAUAGACCUGCAGGAAGAAACAACAGUUGAGCCCUCCACUUAAAGACACUAUGCCUUUCCUGGCUGCAGUAUCCUCCCUUUUCUCGUUUG
(((((((......)))))))..((((((((...((((((((.(.(((....)))...)..)))...............(((......))))))))))))))))............. ( -38.80)
>363129_ENSRNOG00000007590_RAT_8238_8352/1-119
UCCUCUUGACAAGGGGAGGGGAGGAGGAGAGACCUGCAGGAAGAAACAGCAGUUGAGCCCUCCACUUAAAGAUACUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUUU
((((((.....))))))((((((((((.(((..((((.(.......).))))(((((.......))))).((((((..(((......)))...)))))))))))))))))))... ( -37.90)
>consensus
__CCUCCUGACAAGGGGAGG__AGGAGGAUAGACCUGCA_GGAAGAAACAACAGUUGAGCCCUC_AACUUAAAGACAAUAUGCCUUUCCUGGCCGCAGUAUCCUCCCUUUUCUCUUUUG
.............(((((((((((((..........(((.(((((.........(((((........)))))............))))).))).......)))))))))))))...... (-16.38 = -17.88 +   1.50) 

363129.rnaz

RNAalifold consensus structure

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