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Results for CNB 264095

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

264095_ENSG00000185045_HUMAN_8824_8926/1-104    -CCTCAGTTTCACTGCCATGGTTTCCACTCCTGAGAACCACCAGACTTTCATCAACTCAG
264095_ENSMUSG00000043873_MOUSE_5451_5554/1-104 CCCTCAGGTTCAGTGCCATGGTCTCCACTCCACACAACCAACAGACTTTCATTAACTCAG
264095_ENSRNOG00000017574_RAT_8751_8853/1-104   CCCTTAGTTTTATCACCATGGTGTCAACTCCTGAGAGCCGCCACACTTTCATTACTTCAG
264095_SINFRUG00000153198_FUGU_1686_1786/1-104  CC---AGATTCACCACAATGGTGTCAACACAAACCAGCAGAAGCAAATTCATCCAGTCCT
                                                 *   ** ** *   * ***** ** ** *     * *      *  *****    **  


264095_ENSG00000185045_HUMAN_8824_8926/1-104    TCATCAAATTCCTGCGCCAGTATGAGTTTGACGGGCTGGACTTT
264095_ENSMUSG00000043873_MOUSE_5451_5554/1-104 CCATCAAATTCCTGCGCCAGTATGGGTTTGATGGACTGAACCTG
264095_ENSRNOG00000017574_RAT_8751_8853/1-104   TTAGAAAATTCCTGCGAAAGTATGGATTTGATGGACTTAACTT-
264095_SINFRUG00000153198_FUGU_1686_1786/1-104  CCATCAAACAGCTGAGAAAATACGGATTTGATGGCCTGGATCTG
                                                  *  ***   *** *  * ** *  ***** ** **  *  * 


//

264095.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 104
 Mean pairwise identity:  68.91
 Mean single sequence MFE: -25.95
 Consensus MFE: -13.93
 Energy contribution: -14.86
 Covariance contribution:   0.94
 Mean z-score:  -2.19
 Structure conservation index:   0.54
 SVM decision value:   2.19
 SVM RNA-class probability: 0.989914
 Prediction: RNA

######################################################################

>264095_ENSG00000185045_HUMAN_8824_8926/1-104
CCUCAGUUUCACUGCCAUGGUUUCCACUCCUGAGAACCACCAGACUUUCAUCAACUCAGUCAUCAAAUUCCUGCGCCAGUAUGAGUUUGACGGGCUGGACUUU
....((((...(((...(((((..((....))..))))).))).............(((((.((((((((.(((....))).))))))))..))))))))).. ( -26.40)
>264095_ENSMUSG00000043873_MOUSE_5451_5554/1-104
CCCUCAGGUUCAGUGCCAUGGUCUCCACUCCACACAACCAACAGACUUUCAUUAACUCAGCCAUCAAAUUCCUGCGCCAGUAUGGGUUUGAUGGACUGAACCUG
....((((((((((....(((........)))............................(((((((((((.(((....))).))))))))))))))))))))) ( -33.60)
>264095_ENSRNOG00000017574_RAT_8751_8853/1-104
CCCUUAGUUUUAUCACCAUGGUGUCAACUCCUGAGAGCCGCCACACUUUCAUUACUUCAGUUAGAAAAUUCCUGCGAAAGUAUGGAUUUGAUGGACUUAACUU
..(((((......(((....))).......))))).....(((((..(((((.((((..((..((....))..))..)))))))))..)).)))......... ( -19.32)
>264095_SINFRUG00000153198_FUGU_1686_1786/1-104
CCAGAUUCACCACAAUGGUGUCAACACAAACCAGCAGAAGCAAAUUCAUCCAGUCCUCCAUCAAACAGCUGAGAAAAUACGGAUUUGAUGGCCUGGAUCUG
.((((..((((.....)))).............((....)).......(((((....((((((((...(((........))).)))))))).))))))))) ( -24.50)
>consensus
CCCUCAGUUUCACCACCAUGGUGUCAACUCCAGACAACCAACACACUUUCAUCAACUCAGCCAUCAAAUUCCUGCGAAAGUAUGGAUUUGAUGGACUGAACCUG
.....(((((((......((((..............))))....................(((((((((((.(((....))).)))))))))))..))))))). (-13.93 = -14.86 +   0.94) 

264095.rnaz

RNAalifold consensus structure

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