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Results for CNB 393786

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

393786_ENSG00000138449_HUMAN_8851_8915/1-67        TAAGGCTT-TGCCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAG-GAAA
393786_ENSDARG00000000241_ZEBRAFISH_9810_9876/1-67 GAAAGGTTATTTCTCTCCGACTTCAGCTACAGTGATAGCTAAGTTTGGAGAGGAGAGAAG
393786_ENSMUSG00000025993_MOUSE_9754_9818/1-67     TAAGGCTT-TGGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAG-ACAA
393786_SINFRUG00000122977_FUGU_3359_3421/1-67      -AAAAGCA-TTTCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAGGGGAG-GAAA
393786_ENSRNOG00000003872_RAT_9703_9767/1-67       TAAGGCTT-TAGCTTTCCAACTTCAGCTACAGTGTTAGCTAAGTTTGGAAAGAAG-ACAT
                                                    **      *  ** *** *************** **************  * **   * 


393786_ENSG00000138449_HUMAN_8851_8915/1-67        AAAGAAA
393786_ENSDARG00000000241_ZEBRAFISH_9810_9876/1-67 GGAGATA
393786_ENSMUSG00000025993_MOUSE_9754_9818/1-67     AAAGAAG
393786_SINFRUG00000122977_FUGU_3359_3421/1-67      ACGGGA-
393786_ENSRNOG00000003872_RAT_9703_9767/1-67       AAAGAAG
                                                      *   


//

393786.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 67
 Mean pairwise identity:  79.79
 Mean single sequence MFE: -18.86
 Consensus MFE: -17.60
 Energy contribution: -16.88
 Covariance contribution:  -0.72
 Mean z-score:  -3.27
 Structure conservation index:   0.93
 SVM decision value:   3.15
 SVM RNA-class probability: 0.998586
 Prediction: RNA

######################################################################

>393786_ENSG00000138449_HUMAN_8851_8915/1-67
UAAGGCUUUGCCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGGAAAAAAGAAA
.....((((.((((((((((((.(((((......)))))))).)))))...))))...))))... ( -17.40)
>393786_ENSDARG00000000241_ZEBRAFISH_9810_9876/1-67
GAAAGGUUAUUUCUCUCCGACUUCAGCUACAGUGAUAGCUAAGUUUGGAGAGGAGAGAAGGGAGAUA
.........((((((((((((((.(((((......)))))))).)))))))))))............ ( -21.50)
>393786_ENSMUSG00000025993_MOUSE_9754_9818/1-67
UAAGGCUUUGGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAAAAAGAAG
......((((.(((((((((((.(((((......)))))))).))))))))....))))...... ( -18.40)
>393786_SINFRUG00000122977_FUGU_3359_3421/1-67
AAAAGCAUUUCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAGGGGAGGAAAACGGGA
.......((((((((((((((.(((((......)))))))).))))))))))).......... ( -18.50)
>393786_ENSRNOG00000003872_RAT_9703_9767/1-67
UAAGGCUUUAGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAGACAUAAAGAAG
.....(((((.(((((((((((.(((((......)))))))).))))))))......)))))... ( -18.50)
>consensus
UAAGGCUU_UGGCUUUCCAACUUCAGCUACAGUGUUAGCUAAGUUUGGAAAGAAG_GAAAAAAGAAA
............(((((((((((.(((((......)))))))).))))))))............... (-17.60 = -16.88 +  -0.72) 

393786.rnaz

RNAalifold consensus structure

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