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Results for CNB 79519-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


79519_ENSG00000181982_HUMAN_9896_9998/1-105        -AGTTTGTACTGGTCCCTTTCCTGTTGACAGGTGTCCAGCTCCTTGGAGAGGATCAGCAG
79519_ENSMUSG00000051719_MOUSE_9895_9998/1-105     -AGCTTGTACTGGTCCCTCTCCTGCTGGCAGGTGTCCAGCTCCTTGGAGAGGATCAGCAG
79519_SINFRUG00000140484_FUGU_399_501/1-105        -AGTTTGTACTGGTCCCTCTCCTGCTGACACGTGTCCAGCTCCTTCGACAGGATCAGGAG
79519_ENSDARG00000020857_ZEBRAFISH_9893_9996/1-105 CAGTTTGAACTGATCCCTTTCCTGCTGGCAAGTGTCCAGTTCTTTCGATAAGATCAGCAG
79519_ENSRNOG00000024454_RAT_9896_9998/1-105       -AGCTTGTACTGGTCCCTCTCCTGCTGGCAGGTGTCCAGCTCCTTGGAGAGGATCAGTAG
                                                    ** *** **** ***** ***** ** ** ******** ** ** ** * ****** **


79519_ENSG00000181982_HUMAN_9896_9998/1-105        GGCTTCCTTCTTACTCTCCAGCTTCCTCTTACACACCAGGTACT-
79519_ENSMUSG00000051719_MOUSE_9895_9998/1-105     AGCCTCCTTCTTGCTCTCCAGCTTCCGTTTACACACCAGGTACTA
79519_SINFRUG00000140484_FUGU_399_501/1-105        GGCTTCTTTCTTACTCTCCAGCTTCTGCTTACAAACCATGAACT-
79519_ENSDARG00000020857_ZEBRAFISH_9893_9996/1-105 TGCCTCCTTCTTACTCTCCAGCTTTCTTTTGCACACCAGGAACT-
79519_ENSRNOG00000024454_RAT_9896_9998/1-105       AGCCTCCTTCTTGCTCTCCAGCTTCCGTTTACACACCAGGTACT-
                                                    ** ** ***** ***********    ** ** **** * *** 

79519-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 105
 Mean pairwise identity:  86.61
 Mean single sequence MFE: -29.66
 Consensus MFE: -21.28
 Energy contribution: -21.28
 Covariance contribution:  -0.00
 Mean z-score:  -1.96
 Structure conservation index:   0.72
 SVM decision value:   0.45
 SVM RNA-class probability: 0.740989
 Prediction: RNA

######################################################################

>79519_ENSG00000181982_HUMAN_9896_9998/1-105
AGUUUGUACUGGUCCCUUUCCUGUUGACAGGUGUCCAGCUCCUUGGAGAGGAUCAGCAGGGCUUCCUUCUUACUCUCCAGCUUCCUCUUACACACCAGGUACU
.....((((((((.......(((....)))((((..((....((((((((....((.(((....))).))..))))))))....))...)))))))).)))). ( -28.20)
>79519_ENSMUSG00000051719_MOUSE_9895_9998/1-105
AGCUUGUACUGGUCCCUCUCCUGCUGGCAGGUGUCCAGCUCCUUGGAGAGGAUCAGCAGAGCCUCCUUCUUGCUCUCCAGCUUCCGUUUACACACCAGGUACUA
.....((((((((.(((((((.((((((....).))))).....)))))))...((((((((.........)))))...)))...........)))).)))).. ( -35.30)
>79519_SINFRUG00000140484_FUGU_399_501/1-105
AGUUUGUACUGGUCCCUCUCCUGCUGACACGUGUCCAGCUCCUUCGACAGGAUCAGGAGGGCUUCUUUCUUACUCUCCAGCUUCUGCUUACAAACCAUGAACU
.(((((((.((((((.((....((((((....)).))))......))..))))))((((((...........))))))(((....))))))))))........ ( -27.70)
>79519_ENSDARG00000020857_ZEBRAFISH_9893_9996/1-105
CAGUUUGAACUGAUCCCUUUCCUGCUGGCAAGUGUCCAGUUCUUUCGAUAAGAUCAGCAGUGCCUCCUUCUUACUCUCCAGCUUUCUUUUGCACACCAGGAACU
((((....))))......((((((..((((..(((.....((((.....))))...))).))))................((........))....)))))).. ( -19.90)
>79519_ENSRNOG00000024454_RAT_9896_9998/1-105
AGCUUGUACUGGUCCCUCUCCUGCUGGCAGGUGUCCAGCUCCUUGGAGAGGAUCAGUAGAGCCUCCUUCUUGCUCUCCAGCUUCCGUUUACACACCAGGUACU
.((((((((((((((.(((((.((((((....).))))).....))))))))))))))((((.........))))....................)))))... ( -37.20)
>consensus
_AGUUUGUACUGGUCCCUCUCCUGCUGGCAGGUGUCCAGCUCCUUGGAGAGGAUCAGCAGAGCCUCCUUCUUACUCUCCAGCUUCCGUUUACACACCAGGUACU_
..((((...(((((((.(((((.((((((....)).)))).....))))))))))))..)))).......................................... (-21.28 = -21.28 +  -0.00) 

79519-rev.rnaz

RNAalifold consensus structure

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