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Results for CNB 233531-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


233531_ENSG00000154358_HUMAN_506_594/1-89      TTCTTCCCGTCCTTGTACCACGTCACCTCTGTCTGGGCCTGGGCCACCTCGCAGCTCAGC
233531_ENSMUSG00000020452_MOUSE_6501_6587/1-89 -TCTTCCCGTCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCGCAGCTCAGT
233531_ENSRNOG00000008975_RAT_3479_3567/1-89   TTCTTCCCATCCTTGAACCATGTCACCTCAGTCTGGGCCTGGGCCACCTCACAGCTCAGT
233531_SINFRUG00000147616_FUGU_1538_1626/1-89  AGCTTGCCATCTTTGTACCATTTCACTTCTGTTTTCCTATCGGCTACTTCACAGCTCAGA
                                                 *** ** ** *** ****  **** ** ** *     * *** ** ** ******** 


233531_ENSG00000154358_HUMAN_506_594/1-89      GTGGCAATGGCCCCCGCCTCGGCCTGCAC
233531_ENSMUSG00000020452_MOUSE_6501_6587/1-89 GTGGCGCTGGCCCCCGCCTCTGCCTTCA-
233531_ENSRNOG00000008975_RAT_3479_3567/1-89   GTGGCACTGGCCCCGGCCTCTGCCTTCAC
233531_SINFRUG00000147616_FUGU_1538_1626/1-89  GTGGCTCTCTGGGACAAGATGGCTTTCAC
                                               *****  *             ** * ** 

233531-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 89
 Mean pairwise identity:  76.03
 Mean single sequence MFE: -26.25
 Consensus MFE: -18.30
 Energy contribution: -18.30
 Covariance contribution:   0.00
 Mean z-score:  -1.54
 Structure conservation index:   0.70
 SVM decision value:   0.23
 SVM RNA-class probability: 0.647470
 Prediction: RNA

######################################################################

>233531_ENSG00000154358_HUMAN_506_594/1-89
UUCUUCCCGUCCUUGUACCACGUCACCUCUGUCUGGGCCUGGGCCACCUCGCAGCUCAGCGUGGCAAUGGCCCCCGCCUCGGCCUGCAC
..............................(((.((((..((((((((.(((......))).))...))))))..)))).)))...... ( -28.20)
>233531_ENSMUSG00000020452_MOUSE_6501_6587/1-89
UCUUCCCGUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCGCAGCUCAGUGUGGCGCUGGCCCCCGCCUCUGCCUUCA
.............................((..((((..((((((...(((.((.....)).))).))))))..))))..))..... ( -24.20)
>233531_ENSRNOG00000008975_RAT_3479_3567/1-89
UUCUUCCCAUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCGGCCUCUGCCUUCAC
..............................((..(((((.((((((((.(((......))).))...)))))).)))))..))...... ( -28.70)
>233531_SINFRUG00000147616_FUGU_1538_1626/1-89
AGCUUGCCAUCUUUGUACCAUUUCACUUCUGUUUUCCUAUCGGCUACUUCACAGCUCAGAGUGGCUCUCUGGGACAAGAUGGCUUUCAC
.....((((((((.((.((......................((((.......))))(((((.....)))))))))))))))))...... ( -23.90)
>consensus
UUCUUCCCAUCCUUGAACCAUGUCACCUCAGUCUGGGCCUGGGCCACCUCACAGCUCAGUGUGGCACUGGCCCCCGCCUCGGCCUUCAC
..............................(((.((((..((((((((.(((......))).))...))))))..)))).)))...... (-18.30 = -18.30 +   0.00) 

233531-rev.rnaz

RNAalifold consensus structure

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