Index >

Results for CNB 143688-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


143688_ENSG00000165655_HUMAN_9501_9616/1-116        TCTGGCGAGGAAACTCACTTCAAAAGCAGCTGCACCAAGGGGGAGATTAAAGCCTTTGCC
143688_ENSMUSG00000039081_MOUSE_9373_9488/1-116     TCTGGCGAGGAAACTCACTTCAAAAGCAGCTGCACCGAGGGGGAGATTAAAGCCTTTGCC
143688_SINFRUG00000138200_FUGU_9522_9635/1-116      -CTGGTAGAAAATTTCACTTCAAAAGCAGCTG-AATTAGTCCGAGATTAAAGCCTTTGCC
143688_ENSRNOG00000014237_RAT_9547_9660/1-116       -CTGGCGAGGAAACTCACTTCAAAAGCAGCTGCACGGAGGGGGAGATTAAAGCCTTTGCC
143688_ENSDARG00000018492_ZEBRAFISH_9140_9253/1-116 ACTGGTAGAAATTTTCACTTCAAAAGCAGCTG-AATTAGTCCGAGATTAAAGCCCTTGCC
                                                     ****     *   ****************** *   **   ************ *****


143688_ENSG00000165655_HUMAN_9501_9616/1-116        GCCTTCCAATCAAATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACGCG
143688_ENSMUSG00000039081_MOUSE_9373_9488/1-116     GCCTTCCAATCAAATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACGCG
143688_SINFRUG00000138200_FUGU_9522_9635/1-116      GCCTTCCAATCAAATGGGACCCTGAGGTGATTGGAGGGTCAAGGGGATGTGACGTT
143688_ENSRNOG00000014237_RAT_9547_9660/1-116       GCCTTCCAATCAAATGGGAGCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACGC-
143688_ENSDARG00000018492_ZEBRAFISH_9140_9253/1-116 GCCTTCCAATCAAATGGGACCCCGAGGTGATTGGAGGGTCAAGGGGATGTGACGT-
                                                    ******************* ** *******************************  

143688-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 116
 Mean pairwise identity:  88.94
 Mean single sequence MFE: -39.84
 Consensus MFE: -33.70
 Energy contribution: -33.78
 Covariance contribution:   0.08
 Mean z-score:  -1.83
 Structure conservation index:   0.85
 SVM decision value:   1.26
 SVM RNA-class probability: 0.937683
 Prediction: RNA

######################################################################

>143688_ENSG00000165655_HUMAN_9501_9616/1-116
UCUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACCAAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGCG
....(((.(....)((((.((....((....)).((..((.((((........)))).))((((((((((((..(((....)))...))))))))))))...)).)).))))))). ( -42.90)
>143688_ENSMUSG00000039081_MOUSE_9373_9488/1-116
UCUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACCGAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGCG
....(((.(....)((((.((....((....)).((..((.((((........)))).))((((((((((((..(((....)))...))))))))))))...)).)).))))))). ( -42.90)
>143688_SINFRUG00000138200_FUGU_9522_9635/1-116
CUGGUAGAAAAUUUCACUUCAAAAGCAGCUGAAUUAGUCCGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGACCCUGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGUU
.........(((.((((.((.............((((((...))))))..((((((..((((((((((((..(.((...)).)..)))))))))))))))))))).)))).))) ( -33.50)
>143688_ENSRNOG00000014237_RAT_9547_9660/1-116
CUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACGGAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGC
...(((......(((.((((....((....))...))))..))).......((((((..((((((((((((..(((....)))...)))))))))))))))))).......))) ( -41.00)
>143688_ENSDARG00000018492_ZEBRAFISH_9140_9253/1-116
ACUGGUAGAAAUUUUCACUUCAAAAGCAGCUGAAUUAGUCCGAGAUUAAAGCCCUUGCCGCCUUCCAAUCAAAUGGGACCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGU
..............((((.((.............((((((...))))))..((((((..((((((((((((..(((....)))...)))))))))))))))))))).))))... ( -38.90)
>consensus
_CUGGCGAGGAAACUCACUUCAAAAGCAGCUGCACCGAGGGGGAGAUUAAAGCCUUUGCCGCCUUCCAAUCAAAUGGGAGCCCGAGGUGAUUGGAGGGUCAAGGGGAUGUGACGC_
..............((((.((....((....))...................((((((..((((((((((((..(((....)))...)))))))))))))))))))).)))).... (-33.70 = -33.78 +   0.08) 

143688-rev.rnaz

RNAalifold consensus structure

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