Index >

Results for CNB 388273

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

388273_ENSG00000162992_HUMAN_7923_8102/1-183        GAAAGGGTTAATCTCTCCTGCGGGTAAAAACAGGTCCGCGGAGTCTCTAACTGGCGACAG
388273_ENSRNOG00000005609_RAT_7833_8012/1-183       CAAAGGGTTAATCTCTCCTGCGGGTAAAAACAGGTCCGCGGAGTCTCTAACTGGCGACAG
388273_ENSDARG00000019566_ZEBRAFISH_7850_8029/1-183 GAAAGGGTTAATCCATCCTGCGGGTACAAACAGGTCCACGGAGTCTCTAACTGGCGACAG
388273_ENSMUSG00000034701_MOUSE_1564_1742/1-183     -AAAGGGTTAATCTCTCCTGCGGGTAAAAACAGGTCCGCGGAGTCTCTAACTGGCGACAG
                                                     ************  *********** ********** **********************


388273_ENSG00000162992_HUMAN_7923_8102/1-183        ATGGGCCACTTTCTTCTGGCCACAAAGGGGCCGGAATGGAGCGCTCCGCGGCATACAAAT
388273_ENSRNOG00000005609_RAT_7833_8012/1-183       ATGGGCCACTTTCTTCTGGCCACAAAGGGGCCGGAATGGAGCGCTCCGCGGCATACAAAT
388273_ENSDARG00000019566_ZEBRAFISH_7850_8029/1-183 ATGG-CCACTTTCTTTCGGCCACAAAGGGAC-GGAATACGGAGCTCTGGCGAATACAAAT
388273_ENSMUSG00000034701_MOUSE_1564_1742/1-183     ATGGGCCACTTTCTTCTGGCCACAAAGGGGCCGGAATGGAGCGCTCCGCGGCATACAAAT
                                                    **** **********  ************ * *****   * **** *  * ********


388273_ENSG00000162992_HUMAN_7923_8102/1-183        GGGC-AGGTCACGTG--GTTCCAGGCTCTTGGCTGGACCGGGAAGACCATATGGCGCATG
388273_ENSRNOG00000005609_RAT_7833_8012/1-183       AGGC-AGGTCACGTG--GTTCCCGGCTCTTGGCTGGACCGGGAAGACCATATGGCGCATG
388273_ENSDARG00000019566_ZEBRAFISH_7850_8029/1-183 GAAAGAGATCACGTGACGCTTGAGGCCGTTTTCCTGACGTAGTCGGCCATATGGCGCGTG
388273_ENSMUSG00000034701_MOUSE_1564_1742/1-183     AGGC-AGGTCACGTG--GTTCCCGGCTCTTGGCTGGACCGGGAAGACCATATGGCGCATG
                                                         ** *******  * *   ***  **  *  ***   *  * *********** **


388273_ENSG00000162992_HUMAN_7923_8102/1-183        CCN
388273_ENSRNOG00000005609_RAT_7833_8012/1-183       CCG
388273_ENSDARG00000019566_ZEBRAFISH_7850_8029/1-183 CC-
388273_ENSMUSG00000034701_MOUSE_1564_1742/1-183     CCG
                                                    ** 


//

388273.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 183
 Mean pairwise identity:  87.33
 Mean single sequence MFE: -70.52
 Consensus MFE: -50.94
 Energy contribution: -51.75
 Covariance contribution:   0.81
 Mean z-score:  -1.41
 Structure conservation index:   0.72
 SVM decision value:  -0.04
 SVM RNA-class probability: 0.515239
 Prediction: RNA

######################################################################

>388273_ENSG00000162992_HUMAN_7923_8102/1-183
GAAAGGGUUAAUCUCUCCUGCGGGUAAAAACAGGUCCGCGGAGUCUCUAACUGGCGACAGAUGGGCCACUUUCUUCUGGCCACAAAGGGGCCGGAAUGGAGCGCUCCGCGGCAUACAAAUGGGCAGGUCACGUGGUUCCAGGCUCUUGGCUGGACCGGGAAGACCAUAUGGCGCAUGCCN
.....((((..((((.(((((..((....))..(.((((((((((((((.(((((..(...(((((((........))))).))..)..)))))..))))).))))))))))..........)))))......(((.((((.(....).))))))))))).))))....(((....))). ( -70.60)
>388273_ENSRNOG00000005609_RAT_7833_8012/1-183
CAAAGGGUUAAUCUCUCCUGCGGGUAAAAACAGGUCCGCGGAGUCUCUAACUGGCGACAGAUGGGCCACUUUCUUCUGGCCACAAAGGGGCCGGAAUGGAGCGCUCCGCGGCAUACAAAUAGGCAGGUCACGUGGUUCCCGGCUCUUGGCUGGACCGGGAAGACCAUAUGGCGCAUGCCG
...((((.....))))((((..........)))).((((((((((((((.(((((..(...(((((((........))))).))..)..)))))..))))).)))))))))..........(((((((((..((((((((((.(((.....)))))))))..))))..)))).).)))). ( -76.20)
>388273_ENSDARG00000019566_ZEBRAFISH_7850_8029/1-183
GAAAGGGUUAAUCCAUCCUGCGGGUACAAACAGGUCCACGGAGUCUCUAACUGGCGACAGAUGGCCACUUUCUUUCGGCCACAAAGGGACGGAAUACGGAGCUCUGGCGAAUACAAAUGAAAGAGAUCACGUGACGCUUGAGGCCGUUUUCCUGACGUAGUCGGCCAUAUGGCGCGUGCC
...(((((......)))))...(((((......(.(.(((..((((((..(((....))).(((((..........)))))...))))))((((.((((..(((.((((....((..(((......)))..)).)))).))).)))).))))...))).).).(((....)))..))))) ( -59.10)
>388273_ENSMUSG00000034701_MOUSE_1564_1742/1-183
AAAGGGUUAAUCUCUCCUGCGGGUAAAAACAGGUCCGCGGAGUCUCUAACUGGCGACAGAUGGGCCACUUUCUUCUGGCCACAAAGGGGCCGGAAUGGAGCGCUCCGCGGCAUACAAAUAGGCAGGUCACGUGGUUCCCGGCUCUUGGCUGGACCGGGAAGACCAUAUGGCGCAUGCCG
..((((.....))))((((..........)))).((((((((((((((.(((((..(...(((((((........))))).))..)..)))))..))))).)))))))))..........(((((((((..((((((((((.(((.....)))))))))..))))..)))).).)))). ( -76.20)
>consensus
GAAAGGGUUAAUCUCUCCUGCGGGUAAAAACAGGUCCGCGGAGUCUCUAACUGGCGACAGAUGGGCCACUUUCUUCUGGCCACAAAGGGGCCGGAAUGGAGCGCUCCGCGGCAUACAAAUAGGC_AGGUCACGUG__GUUCCAGGCUCUUGGCUGGACCGGGAAGACCAUAUGGCGCAUGCC_
...((((........))))...((((.........((((((((((((((.(((....))).............((((((((.......))))))))))))).)))))))))................((((..((...(((((((.((......)).)))))))...))..))))...)))). (-50.94 = -51.75 +   0.81) 

388273.rnaz

RNAalifold consensus structure

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