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Results for CNB 118451-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


118451_SINFRUG00000145244_FUGU_2793_2847/1-57      -ATCTCCTGCCACACCTTGGCATTGGGGTTCAAACCGGCACCCTTGGAGGTGACCT-
118451_ENSMUSG00000046236_MOUSE_9818_9873/1-57     AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTGCCTTTAGATGTCACCT-
118451_ENSRNOG00000013146_RAT_4861_4917/1-57       AATTTCTTGCCATACTTTGGCATTAGGATTTAAACCAGTGCCTTTAGATGTCACGTG
118451_ENSDARG00000028567_ZEBRAFISH_8408_8464/1-57 CACTTCCTGCCACACTTTAGCATTGGGATTCAGACCAGCCCCCTTGGTGGTCACCTT
                                                    *  ** ***** ** ** ***** ** ** * *** *  ** ** *  ** ** * 

118451-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 57
 Mean pairwise identity:  77.42
 Mean single sequence MFE: -13.57
 Consensus MFE: -10.01
 Energy contribution:  -9.58
 Covariance contribution:  -0.44
 Mean z-score:  -1.57
 Structure conservation index:   0.74
 SVM decision value:   0.37
 SVM RNA-class probability: 0.707521
 Prediction: RNA

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>118451_SINFRUG00000145244_FUGU_2793_2847/1-57
AUCUCCUGCCACACCUUGGCAUUGGGGUUCAAACCGGCACCCUUGGAGGUGACCU
(((((((((((.....)))))..(((((((.....)).))))).))))))..... ( -18.80)
>118451_ENSMUSG00000046236_MOUSE_9818_9873/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACCU
.......((.(((.((..((((((.((.......))))))))...))))).))... ( -11.80)
>118451_ENSRNOG00000013146_RAT_4861_4917/1-57
AAUUUCUUGCCAUACUUUGGCAUUAGGAUUUAAACCAGUGCCUUUAGAUGUCACGUG
.......((.(((.((..((((((.((.......))))))))...))))).)).... ( -11.80)
>118451_ENSDARG00000028567_ZEBRAFISH_8408_8464/1-57
CACUUCCUGCCACACUUUAGCAUUGGGAUUCAGACCAGCCCCCUUGGUGGUCACCUU
...(((((((.........)))..))))....(((((.((.....)))))))..... ( -11.90)
>consensus
AAUUUCCUGCCACACUUUGGCAUUAGGAUUCAAACCAGCGCCCUUAGAGGUCACCU_
.(((((((((((.....)))))..((((((......))).)))..))))))...... (-10.01 =  -9.58 +  -0.44) 

118451-rev.rnaz

RNAalifold consensus structure

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