Index >

Results for CNB 359973-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


359973_ENSG00000121297_HUMAN_9110_9264/1-164    CAAACATAATTTGCCACCTTATTCTTCTCAAGGGGCAACAGCTTGAAATTAAAACTAAAT
359973_ENSMUSG00000043684_MOUSE_8698_8852/1-164 CAAACATAATTTGCCACCTTATTCTTCTCAAGGGGCAACAGCTTGAAATTAAAACTAAAT
359973_SINFRUG00000146762_FUGU_9413_9573/1-164  -AAACATAATGCACCATTTTATTTATCTCAGGGCGCAACAGCTTGAAATGAAAACTAAAT
359973_ENSRNOG00000013938_RAT_9649_9802/1-164   -AAACATAATTTGCCACCTTATTCTTCTCAAGGGGCAACAGCTTGAAATTAAAACTAAAT
                                                 *********   ***  *****  ***** ** *************** **********


359973_ENSG00000121297_HUMAN_9110_9264/1-164    TTGAAATTAATGAAGCACATTCTGGAGGTGGCATTCATTTCTAAAGTAATAAATTACTTG
359973_ENSMUSG00000043684_MOUSE_8698_8852/1-164 TTGAAATTAATGAAGCACATTCTGGAGGTGGCATTCACTTCTAAAGTAATAAATTACTTG
359973_SINFRUG00000146762_FUGU_9413_9573/1-164  CTGAAATTAATGAAGCCCAATCTCACTGTGGCATTCTCCTCTGGGGTAATAAATGAGTTG
359973_ENSRNOG00000013938_RAT_9649_9802/1-164   TTGAAATTAATGAAGCACATTCTGGAGGTGGCATTCACTTCTAAAGTAATAAATTACTTG
                                                 *************** ** ***    *********   ***   ********* * ***


359973_ENSG00000121297_HUMAN_9110_9264/1-164    TATCAACCTCAGAGACAGCAGTTCCTGTCTGTCA---------A
359973_ENSMUSG00000043684_MOUSE_8698_8852/1-164 TATCAACCTCAGAGACAGCAGTTCCTGTCTGTCA---------A
359973_SINFRUG00000146762_FUGU_9413_9573/1-164  GATCAACCTC-CATCTGTCAGTTAATATGTCTGACGCCTCTTC-
359973_ENSRNOG00000013938_RAT_9649_9802/1-164   TATCAACCTCAGAGACAGCAGTTCCTGTCTGTCA---------A
                                                 *********  *     *****  * * * * *          

359973-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 164
 Mean pairwise identity:  84.21
 Mean single sequence MFE: -34.15
 Consensus MFE: -21.67
 Energy contribution: -21.67
 Covariance contribution:   0.00
 Mean z-score:  -1.97
 Structure conservation index:   0.63
 SVM decision value:   0.34
 SVM RNA-class probability: 0.694057
 Prediction: RNA

######################################################################

>359973_ENSG00000121297_HUMAN_9110_9264/1-164
CAAACAUAAUUUGCCACCUUAUUCUUCUCAAGGGGCAACAGCUUGAAAUUAAAACUAAAUUUGAAAUUAAUGAAGCACAUUCUGGAGGUGGCAUUCAUUUCUAAAGUAAUAAAUUACUUGUAUCAACCUCAGAGACAGCAGUUCCUGUCUGUCAA
...........(((((((((...(((((((((.(....)..)))))..(((((......))))).......)))).........)))))))))..........((((((....))))))..............((((((((...))).))))).. ( -34.20)
>359973_ENSMUSG00000043684_MOUSE_8698_8852/1-164
CAAACAUAAUUUGCCACCUUAUUCUUCUCAAGGGGCAACAGCUUGAAAUUAAAACUAAAUUUGAAAUUAAUGAAGCACAUUCUGGAGGUGGCAUUCACUUCUAAAGUAAUAAAUUACUUGUAUCAACCUCAGAGACAGCAGUUCCUGUCUGUCAA
...........(((((((((...(((((((((.(....)..)))))..(((((......))))).......)))).........)))))))))..........((((((....))))))..............((((((((...))).))))).. ( -34.20)
>359973_SINFRUG00000146762_FUGU_9413_9573/1-164
AAACAUAAUGCACCAUUUUAUUUAUCUCAGGGCGCAACAGCUUGAAAUGAAAACUAAAUCUGAAAUUAAUGAAGCCCAAUCUCACUGUGGCAUUCUCCUCUGGGGUAAUAAAUGAGUUGGAUCAACCUCCAUCUGUCAGUUAAUAUGUCUGACGCCUCUUC
.........((..(((((...(((((((((((.((....)).............................((((((((.......)).))).)))..))))))))))).)))))((.((((......)))).))(((((.........)))))))...... ( -34.00)
>359973_ENSRNOG00000013938_RAT_9649_9802/1-164
AAACAUAAUUUGCCACCUUAUUCUUCUCAAGGGGCAACAGCUUGAAAUUAAAACUAAAUUUGAAAUUAAUGAAGCACAUUCUGGAGGUGGCAUUCACUUCUAAAGUAAUAAAUUACUUGUAUCAACCUCAGAGACAGCAGUUCCUGUCUGUCAA
..........(((((((((...(((((((((.(....)..)))))..(((((......))))).......)))).........)))))))))..........((((((....))))))..............((((((((...))).))))).. ( -34.20)
>consensus
_AAACAUAAUUUGCCACCUUAUUCUUCUCAAGGGGCAACAGCUUGAAAUUAAAACUAAAUUUGAAAUUAAUGAAGCACAUUCUGGAGGUGGCAUUCACUUCUAAAGUAAUAAAUUACUUGUAUCAACCUCAGAGACAGCAGUUCCUGUCUGUCA_________A
...........(((((((((.......(((((.(....)..))))).........................(((.....)))..)))))))))..........((((((....)))))).............((((((......)))))).............. (-21.67 = -21.67 +   0.00) 

359973-rev.rnaz

RNAalifold consensus structure

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