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Results for CNB 393786-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


393786_ENSG00000138449_HUMAN_8851_8915/1-67        TTTCTTTTTTC-CTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGGCA-A
393786_ENSDARG00000000241_ZEBRAFISH_9810_9876/1-67 TATCTCCCTTCTCTCCTCTCCAAACTTAGCTATCACTGTAGCTGAAGTCGGAGAGAAATA
393786_ENSMUSG00000025993_MOUSE_9754_9818/1-67     CTTCTTTTTGT-CTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGCCA-A
393786_SINFRUG00000122977_FUGU_3359_3421/1-67      -TCCCGTTTTC-CTCCCCTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGAAA-T
393786_ENSRNOG00000003872_RAT_9703_9767/1-67       CTTCTTTATGT-CTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGCTA-A
                                                      *    *   ** *  ************** *************** *** **  *  


393786_ENSG00000138449_HUMAN_8851_8915/1-67        AGCCTTA
393786_ENSDARG00000000241_ZEBRAFISH_9810_9876/1-67 ACCTTTC
393786_ENSMUSG00000025993_MOUSE_9754_9818/1-67     AGCCTTA
393786_SINFRUG00000122977_FUGU_3359_3421/1-67      GCTTTT-
393786_ENSRNOG00000003872_RAT_9703_9767/1-67       AGCCTTA
                                                       ** 

393786-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 5
 Columns: 67
 Mean pairwise identity:  79.79
 Mean single sequence MFE: -17.50
 Consensus MFE: -17.20
 Energy contribution: -17.56
 Covariance contribution:   0.36
 Mean z-score:  -3.99
 Structure conservation index:   0.98
 SVM decision value:   3.19
 SVM RNA-class probability: 0.998693
 Prediction: RNA

######################################################################

>393786_ENSG00000138449_HUMAN_8851_8915/1-67
UUUCUUUUUUCCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGGCAAAGCCUUA
.............(((((((((..(((((((......)))))))..))))))))).......... ( -19.00)
>393786_ENSDARG00000000241_ZEBRAFISH_9810_9876/1-67
UAUCUCCCUUCUCUCCUCUCCAAACUUAGCUAUCACUGUAGCUGAAGUCGGAGAGAAAUAACCUUUC
...............((((((.(..((((((((....))))))))..).))))))............ ( -18.20)
>393786_ENSMUSG00000025993_MOUSE_9754_9818/1-67
CUUCUUUUUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCCAAAGCCUUA
.....(((((....((((((((..(((((((......)))))))..)))))))).)))))..... ( -18.70)
>393786_SINFRUG00000122977_FUGU_3359_3421/1-67
UCCCGUUUUCCUCCCCUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAAUGCUUUU
................(((((..(((((((......)))))))..)))))............. ( -13.80)
>393786_ENSRNOG00000003872_RAT_9703_9767/1-67
CUUCUUUAUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCUAAAGCCUUA
..............((((((((..(((((((......)))))))..))))))))........... ( -17.80)
>consensus
CUUCUUUUUUC_CUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAA_AAGCCUUA
...............((((((((..(((((((......)))))))..))))))))............ (-17.20 = -17.56 +   0.36) 

393786-rev.rnaz

RNAalifold consensus structure

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