Index >

Results for CNB 393794-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


393794_ENSG00000138449_HUMAN_8847_8919/1-75        GGATTTTCTTTTTTC-CTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGG
393794_ENSDARG00000000241_ZEBRAFISH_9806_9879/1-75 -GAATATCTCCCTTCTCTCCTCTCCAAACTTAGCTATCACTGTAGCTGAAGTCGGAGAGA
393794_ENSMUSG00000025993_MOUSE_9750_9822/1-75     GGGTCTTCTTTTTGT-CTTCTTTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGC
393794_SINFRUG00000122977_FUGU_3355_3426/1-75      GTTGCTCCCGTTTTC-CTCCCCTCCAAACTTAGCTAACACTGTAGCTGAAGTTGGAAAGA
                                                          *    *   ** *  ************** *************** *** ** 


393794_ENSG00000138449_HUMAN_8847_8919/1-75        CA-AAGCCTTATGGA
393794_ENSDARG00000000241_ZEBRAFISH_9806_9879/1-75 AATAACCTTTCTAGA
393794_ENSMUSG00000025993_MOUSE_9750_9822/1-75     CA-AAGCCTTATGGG
393794_SINFRUG00000122977_FUGU_3355_3426/1-75      AA-TGCTTTTATAG-
                                                    *      ** * * 

393794-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 75
 Mean pairwise identity:  75.23
 Mean single sequence MFE: -18.38
 Consensus MFE: -17.00
 Energy contribution: -17.50
 Covariance contribution:   0.50
 Mean z-score:  -2.42
 Structure conservation index:   0.93
 SVM decision value:   3.41
 SVM RNA-class probability: 0.999174
 Prediction: RNA

######################################################################

>393794_ENSG00000138449_HUMAN_8847_8919/1-75
GGAUUUUCUUUUUUCCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGGCAAAGCCUUAUGGA
(((..........))).(((((((((..(((((((......)))))))..))))))))).....((....)). ( -21.50)
>393794_ENSDARG00000000241_ZEBRAFISH_9806_9879/1-75
GAAUAUCUCCCUUCUCUCCUCUCCAAACUUAGCUAUCACUGUAGCUGAAGUCGGAGAGAAAUAACCUUUCUAGA
..................((((((.(..((((((((....))))))))..).))))))................ ( -18.20)
>393794_ENSMUSG00000025993_MOUSE_9750_9822/1-75
GGGUCUUCUUUUUGUCUUCUUUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGCCAAAGCCUUAUGGG
((((......((((....((((((((..(((((((......)))))))..)))))))).))))))))...... ( -20.00)
>393794_SINFRUG00000122977_FUGU_3355_3426/1-75
GUUGCUCCCGUUUUCCUCCCCUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAAUGCUUUUAUAG
.....................(((((..(((((((......)))))))..)))))................. ( -13.80)
>consensus
GGAUCUUCUUUUUUC_CUCCUCUCCAAACUUAGCUAACACUGUAGCUGAAGUUGGAAAGAAA_AACCCUUAUAGA
...................((((((((..(((((((......)))))))..))))))))................ (-17.00 = -17.50 +   0.50) 

393794-rev.rnaz

RNAalifold consensus structure

PS | PDF	PS | PDF