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Results for CNB 391318

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment

391318_ENSG00000180806_HUMAN_1484_1578/1-96      CTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGA
391318_ENSDARG00000013621_ZEBRAFISH_654_741/1-96 GAGTGGGAGACCCATAACGTTG--ATTTAAATATTATCCAGGTGACCACAGTAAGTCAAG
391318_ENSMUSG00000036139_MOUSE_1625_1719/1-96   CTTAGGTAGTTTCATGTTGTTGGGATTGAGTTTTGAACTCGGCAACAAGAAACTGCCTGA
391318_SINFRUG00000146331_FUGU_536_621/1-96      -AGTGAAAGACC-ATAACGTTG--ATTTAAATATTATCCAGGTGACCACAGTAAGTCAAG
                                                     *  **    **   ****  *** *  * * * *  **  ** * *    * *   


391318_ENSG00000180806_HUMAN_1484_1578/1-96      GTTACATCAGTCGGTTTTCGTCGAGGGCCCCAACC-
391318_ENSDARG00000013621_ZEBRAFISH_654_741/1-96 GTCATAAAATTGTAATGTCATGACGGTCC------T
391318_ENSMUSG00000036139_MOUSE_1625_1719/1-96   GTTACATCAGTCGGTTTTCGTCGAGGGCCCCAATC-
391318_SINFRUG00000146331_FUGU_536_621/1-96      GTCATAAAATTCTAATGTCAGGTTCGCCC------T
                                                 ** * *  * *    * **      * **       


//

391318.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 96
 Mean pairwise identity:  58.20
 Mean single sequence MFE: -26.13
 Consensus MFE: -10.96
 Energy contribution: -16.28
 Covariance contribution:   5.31
 Mean z-score:  -1.91
 Structure conservation index:   0.42
 SVM decision value:   0.68
 SVM RNA-class probability: 0.820585
 Prediction: RNA

######################################################################

>391318_ENSG00000180806_HUMAN_1484_1578/1-96
CUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUUUCGUCGAGGGCCCCAACC
(((((((((((((.((((((((((.(..(...)..).)))))))))).)))))))))))))...........(((((((...)))))))...... ( -37.40)
>391318_ENSDARG00000013621_ZEBRAFISH_654_741/1-96
GAGUGGGAGACCCAUAACGUUGAUUUAAAUAUUAUCCAGGUGACCACAGUAAGUCAAGGUCAUAAAAUUGUAAUGUCAUGACGGUCCU
..(((((...)))))..((((.......(((((((....((((((............))))))......)))))))...))))..... ( -16.20)
>391318_ENSMUSG00000036139_MOUSE_1625_1719/1-96
CUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUUUCGUCGAGGGCCCCAAUC
(((((((((((((.((((((((((.(..(...)..).)))))))))).)))))))))))))...........(((((((...)))))))...... ( -37.40)
>391318_SINFRUG00000146331_FUGU_536_621/1-96
AGUGAAAGACCAUAACGUUGAUUUAAAUAUUAUCCAGGUGACCACAGUAAGUCAAGGUCAUAAAAUUCUAAUGUCAGGUUCGCCCU
.(((((.(((.((((..((......))..))))....((((((............))))))...........)))...)))))... ( -13.50)
>consensus
CAGAGGUAGACCCAUAACGUUG__AUUGAAAUAUGAACCAGGCAACAACAAAAAGCCAAAGUCACAAAAGUCGAAUGUCAUCGAGGGCC_______
(((((((((((((.(((((((((((((.......))))))))))))).)))))))))))))................................... (-10.96 = -16.28 +   5.31) 

391318.rnaz

RNAalifold consensus structure

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