Index >

Results for CNB 284325-rev

Input Alignment

CLUSTAL W(1.81) multiple sequence alignment


284325_ENSG00000183386_HUMAN_8149_8251/1-109        GGGGCCAGGGTCTTTAGAGCTGGAACTCCTGGGCTGGGGGCTATGGTGTAGA--GAAGAT
284325_ENSMUSG00000032643_MOUSE_8110_8210/1-109     -AAGTGGGAGTCTTCAAAGTGGAGAGTCCTCAGGTAGCGGTCATGCTGAAGG--GTGGAG
284325_ENSDARG00000011937_ZEBRAFISH_4131_4233/1-109 GGGGCCAGGGTCTTTAGAGCTGGAACTCCTGGGCTGGGGGCTATGGTGTAGA--GAAGAT
284325_ENSRNOG00000007541_RAT_8103_8209/1-109       -AAGCTGAAGTCTTCAAAGGGGAGAGTCCTCAGGTAGGGGTTATGCTAAAGGATGAAGAG
                                                       *     ***** * **  *  * ****  * * * **  *** *  **   *  ** 


284325_ENSG00000183386_HUMAN_8149_8251/1-109        A--CTCCTCTTTCTCAGCCCCCT-TCCTGCCACTCAGGCCCAGGTTT-C
284325_ENSMUSG00000032643_MOUSE_8110_8210/1-109     A--GAGCCCCTCCTTCTCTCTC--CCCTGTCATTCAGGTCCTGGTTT-C
284325_ENSDARG00000011937_ZEBRAFISH_4131_4233/1-109 A--CTCCTCTTTCTCAGCCCCCT-TCCTGCCACTCAGGCCCAGGTTT-C
284325_ENSRNOG00000007541_RAT_8103_8209/1-109       AACCTCCTCTTCCCTCTCCTTCTCTCCCCCCACCGTCATTCAGGTCTT-
                                                    *     * * * *    *   *   **   **        * *** *  

284325-rev.aln

RNAz output

############################  RNAz 0.1  ##############################

 Sequences: 4
 Columns: 109
 Mean pairwise identity:  65.04
 Mean single sequence MFE: -40.24
 Consensus MFE: -18.74
 Energy contribution: -18.48
 Covariance contribution:  -0.25
 Mean z-score:  -2.18
 Structure conservation index:   0.47
 SVM decision value:   1.57
 SVM RNA-class probability: 0.964410
 Prediction: RNA

######################################################################

>284325_ENSG00000183386_HUMAN_8149_8251/1-109
GGGGCCAGGGUCUUUAGAGCUGGAACUCCUGGGCUGGGGGCUAUGGUGUAGAGAAGAUACUCCUCUUUCUCAGCCCCCUUCCUGCCACUCAGGCCCAGGUUUC
(..(((.((((((...(((.(((.......(((..(((((((..((...((((.((...)).)))).))..)))))))..))).)))))))))))).)))..) ( -43.90)
>284325_ENSMUSG00000032643_MOUSE_8110_8210/1-109
AAGUGGGAGUCUUCAAAGUGGAGAGUCCUCAGGUAGCGGUCAUGCUGAAGGGUGGAGAGAGCCCCUCCUUCUCUCUCCCCUGUCAUUCAGGUCCUGGUUUC
....((((.(((((.....))))).))))((((.((((....))))((.(((.((((((((.........))))))))))).))........))))..... ( -37.30)
>284325_ENSDARG00000011937_ZEBRAFISH_4131_4233/1-109
GGGGCCAGGGUCUUUAGAGCUGGAACUCCUGGGCUGGGGGCUAUGGUGUAGAGAAGAUACUCCUCUUUCUCAGCCCCCUUCCUGCCACUCAGGCCCAGGUUUC
(..(((.((((((...(((.(((.......(((..(((((((..((...((((.((...)).)))).))..)))))))..))).)))))))))))).)))..) ( -43.90)
>284325_ENSRNOG00000007541_RAT_8103_8209/1-109
AAGCUGAAGUCUUCAAAGGGGAGAGUCCUCAGGUAGGGGUUAUGCUAAAGGAUGAAGAGAACCUCCUCUUCCCUCUCCUUCUCUCCCCCCACCGUCAUUCAGGUCUU
...(((((.........((((((((.....(((.(((((..((.(....).))((((((......)))))))))))))).)))))))).........)))))..... ( -35.87)
>consensus
_AAGCCAGAGUCUUCAAAGCGGAAACUCCUCAGCUAGGGGCUAUGCUGAAGA__GAAGAGA__CUCCUCUUCCUCAGCCCCCU_UCCUGCCACUCAGGCCCAGGUUU_C
.(((((.((((((.....((((((......((((((((((....((...................))...))))))))))....)))))).....)))))).))))).. (-18.74 = -18.48 +  -0.25) 

284325-rev.rnaz

RNAalifold consensus structure

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